Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N09
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1794 - 29580767-29584189                                         32   0.26 
09_04_0183 + 15389691-15390197,15391259-15391582                       28   5.5  
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    28   5.5  
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    27   9.7  

>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 461  TMFNHKPRYTRISVNAIFFGTYPSRKPGYYCIKHDINEAF 342
            + F H P  TR+ +    FGT P +K  + CI   + + F
Sbjct: 1098 SQFKHFPTRTRVPLRNFLFGTKPKKKSIFACINPTLQKQF 1137


>09_04_0183 + 15389691-15390197,15391259-15391582
          Length = 276

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +2

Query: 140 MWFFFVCLFVYVIIVYC 190
           +WF+ V +FV +++++C
Sbjct: 74  LWFYLVAMFVLIVVLFC 90


>05_05_0334 +
           24156532-24156565,24156681-24156782,24157145-24157274,
           24157361-24157445,24157525-24157666,24157762-24157894,
           24157993-24158254,24158331-24158519,24158596-24158721,
           24158809-24159195,24159288-24159398,24159629-24160423,
           24161114-24161255,24161350-24162518,24162609-24162818,
           24163010-24163478,24164037-24164464
          Length = 1637

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/49 (20%), Positives = 28/49 (57%)
 Frame = +3

Query: 351 IDVMLNTVIPRFTRGISSEKNRVN*NSRISRFMIEHSQNLI*KNTNHFN 497
           +DV+    I   ++G++ ++ + N   R+ +FM +H  +++    +++N
Sbjct: 774 VDVLYAGSISIRSQGVAEQQRKKNDQQRVLKFMTDHQPHVVCVGASNYN 822


>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 431 RISVNAIFFGTYPSRKPGYYCIKHDINE 348
           R+ +NA   GT+P+    YY  K D NE
Sbjct: 254 RVEINANKCGTHPTPSKPYYVDKIDTNE 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,238
Number of Sequences: 37544
Number of extensions: 170382
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)