Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N09
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    27   8.7  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    27   8.7  

>Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 368 IKHDINEAFFFLVFSND*IVSHGSTYITNIDSHYLPNNNKSTTVTI*YLQT 216
           I +++ E    LV+S    VS+   Y+   D H LP+ +   + T  Y  T
Sbjct: 845 ISYNVQELASILVYSKKRFVSYSEIYLPQSDMHLLPDLSSIASPTCQYNPT 895


>Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 368 IKHDINEAFFFLVFSND*IVSHGSTYITNIDSHYLPNNNKSTTVTI*YLQT 216
           I +++ E    LV+S    VS+   Y+   D H LP+ +   + T  Y  T
Sbjct: 845 ISYNVQELASILVYSKKRFVSYSEIYLPQSDMHLLPDLSSIASPTCQYNPT 895


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 343 FFFWCFQMIKLFL 305
           FF WCFQM++LF+
Sbjct: 170 FFNWCFQMLRLFV 182


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 214 FSDWIMFTT-IHDNNINKQTNKKK 146
           F+ W+ +   I+ N++NK TNKKK
Sbjct: 323 FATWLRYERRINKNDLNKPTNKKK 346


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 214 FSDWIMFTT-IHDNNINKQTNKKK 146
           F+ W+ +   I+ N++NK TNKKK
Sbjct: 323 FATWLRYERRINKNDLNKPTNKKK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,670,047
Number of Sequences: 27780
Number of extensions: 196144
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)