Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N07
         (481 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FJG8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.62 
UniRef50_Q4S8H3 Cluster: Chromosome 2 SCAF14705, whole genome sh...    32   7.7  

>UniRef50_Q1FJG8 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 511

 Score = 35.5 bits (78), Expect = 0.62
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 178 VFNLLYFWKFQCFFLLLRSDLRCHIS*VFIRFYR-RLANYYL 300
           +F L+Y WK +  FL+L S L C    V++  YR RLA  Y+
Sbjct: 316 LFFLMYLWKIKIIFLVLLSTLLCFFLPVWVLKYRVRLAKVYM 357


>UniRef50_Q4S8H3 Cluster: Chromosome 2 SCAF14705, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 2
           SCAF14705, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1531

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 120 LNTCGPMSTLKHHMLLRCINECTK 49
           L    P  TL+HH LL+C+++CT+
Sbjct: 109 LEEAQPYRTLQHHALLQCLSQCTE 132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,962,288
Number of Sequences: 1657284
Number of extensions: 7681398
Number of successful extensions: 13162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13161
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)