Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N07
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     31   0.37 
03_03_0012 + 13737898-13740031,13740347-13740486                       28   4.5  
08_02_0692 + 20080929-20081484,20081932-20081998,20082141-200824...    27   6.0  

>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 327 GQSTLLHLNKVIICQSSIKPYKNLGDM 247
           G ST +HL K+I+CQ S K    LG++
Sbjct: 812 GASTFMHLAKIILCQQSCKFLPPLGEL 838


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/90 (20%), Positives = 40/90 (44%)
 Frame = +3

Query: 6   GVANVLATKPTVVSVWCIRLYILIAYDALMLTWGHKC*GSTPFVLFKLLIYSD*VFKCI* 185
           G+    + K  V  +W + +  L      + T+GH   G    +L++L +YS   +  + 
Sbjct: 74  GLMQSSSVKSEVYPIWAVSMLTLFGCIDSITTYGHDYMGQLWKILYQLCLYSG--YVLLI 131

Query: 186 FIIFLEISMFFFITTIRSKMSYLLSFYKVL 275
            I  +   + +    I S ++++  F++ L
Sbjct: 132 SISAISSDVGYIAMGILSAITFIKGFHRSL 161


>08_02_0692 +
           20080929-20081484,20081932-20081998,20082141-20082474,
           20082835-20083068,20083158-20083319
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 242 LRSDRSNKKKH*NFQKYNKLNTFKHLIT 159
           ++ D S+K++    Q+YN ++ F HL+T
Sbjct: 408 VKDDGSHKERDVELQQYNIISDFTHLVT 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,598,640
Number of Sequences: 37544
Number of extensions: 181432
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)