Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N07
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   9.3  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    27   9.3  

>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 7   VLPTFLQRNLPWSVFGAFVYTS 72
           ++ TFL   LPWS+F  F Y +
Sbjct: 139 LISTFLTAFLPWSIFFGFPYVA 160


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 142 SNY*SIVIKCLNVFNLLYFWKFQCFFLLLRSDLRCHIS*VFI 267
           S + S+++  L++  L+YF   + FFL    +L+C +   FI
Sbjct: 24  SQFWSMLVSSLSIPALIYFITRKIFFLHFHGNLKCLLIVYFI 65


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 142 SNY*SIVIKCLNVFNLLYFWKFQCFFLLLRSDLRCHIS*VFIRFYRRLANYYLVKM 309
           SNY  ++I   +VF L+YF      F L +S    ++  +FI ++  L  + +  +
Sbjct: 23  SNYYQMIISFCSVFPLIYF----LLFKLSKSSFHGNLKTIFISYFVSLVAFSMTHL 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,858
Number of Sequences: 27780
Number of extensions: 195755
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)