Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N06
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    82   4e-17
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.1  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          25   6.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.0  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 32/69 (46%), Positives = 50/69 (72%)
 Frame = +1

Query: 274 MAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP 453
           M  K +      ++ RF++ELEFVQ L+NP Y++FLAQ  Y +++ F+ YL+Y++YWREP
Sbjct: 1   METKWLLSKVPDDKSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREP 60

Query: 454 EYARYLKYP 480
           EY +++ YP
Sbjct: 61  EYVKFIIYP 69


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = -3

Query: 459  IFWLSPVLKVFQVIYKCLL 403
            + W  P++++F ++++CLL
Sbjct: 1166 VVWTRPMIRLFCLVWRCLL 1184


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +2

Query: 89  FSILVYSMIEVITRSRNSIIEYSISAVTEL 178
           FS+ +++ IE + +S+N+ +E S+S + E+
Sbjct: 67  FSLWLFNQIEELEKSKNASVE-SVSKIDEI 95


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 334 LEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 450
           LE+ +C+A    +  LA  GY     ++  L  L Y RE
Sbjct: 471 LEYNECVAAAQLLDHLAACGYFFFSKYIARLASLGYLRE 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,435
Number of Sequences: 5004
Number of extensions: 29851
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)