Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N06
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607... 92 2e-19
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 92 2e-19
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 31 0.49
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360... 31 0.49
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 30 0.86
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661... 30 0.86
02_05_0078 - 25656695-25656888,25656941-25657127,25657765-256580... 28 3.5
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 27 6.0
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 27 6.0
>10_08_0949 -
21759821-21759833,21759985-21760301,21760650-21760728,
21760816-21760912,21761305-21761410
Length = 203
Score = 91.9 bits (218), Expect = 2e-19
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +1
Query: 274 MAAKVMPETEEQN-RIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 450
M + MP + + R RF +ELEF+QCLANP YIH+LAQ Y +++ F+ YLKYL+YW+
Sbjct: 1 MEPEAMPAPDPNDARQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQR 60
Query: 451 PEYARYLKYP 480
PEY +Y+ YP
Sbjct: 61 PEYIKYIMYP 70
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 91.9 bits (218), Expect = 2e-19
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = +1
Query: 280 AKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEY 459
A+ P R RF +ELEF+QCLANP YIH+LAQ Y +++ F+ YLKYL+YW+ PEY
Sbjct: 6 ARPAPPDPNDARQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEY 65
Query: 460 ARYLKYP 480
+Y+ YP
Sbjct: 66 IKYIMYP 72
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 244 YRSTFQTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 381
Y++T ++AAK++ Q +FQ E+E + + +PN +H L
Sbjct: 333 YKATLDNT-LVAAKILHSNITQGLKQFQQEVELLNNIRHPNMVHLL 377
>01_05_0471 +
22535477-22535609,22535714-22535808,22535929-22536050,
22536165-22536702,22536774-22538105
Length = 739
Score = 31.1 bits (67), Expect = 0.49
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 274 MAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 381
+A KV+ +Q R +FQ E+E + C+ +PN + L
Sbjct: 456 VAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLL 491
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 30.3 bits (65), Expect = 0.86
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 274 MAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 381
+A KV+ Q R +FQ E+E + C+ +PN + L
Sbjct: 500 VAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLL 535
>02_02_0081 -
6608901-6609680,6610380-6610808,6610893-6610994,
6611114-6611429,6611624-6611806,6611909-6612030,
6612181-6612251,6612732-6612921
Length = 730
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 274 MAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 381
+A K++ Q R +FQ E+E + C+ +PN + L
Sbjct: 452 VAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLL 487
>02_05_0078 -
25656695-25656888,25656941-25657127,25657765-25658067,
25658152-25658296,25658376-25658613,25658694-25658904,
25659060-25659175,25659420-25659468
Length = 480
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 238 TRYRSTFQTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 381
T Y+ TF+ AAKV+ EQ F E+E + + N + L
Sbjct: 52 TVYKGTFEDGTAFAAKVLSAESEQGINEFLTEIESITEAKHANLVRLL 99
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 298 TEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLK 429
T+ QN ++ V+ + QC A +YI L Q L+ +F+ +L+
Sbjct: 297 TQLQNHLQGSVKRQGTQCPAINDYILILHQASNLQSASFLFFLR 340
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 463 VHILALSSIEGISSNLQMSALSNIH 389
++ + L S+EG SN+Q+ AL N+H
Sbjct: 486 LYAMLLISVEGGLSNVQLDALENMH 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,402,962
Number of Sequences: 37544
Number of extensions: 144356
Number of successful extensions: 393
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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