Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N06
         (485 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   5.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   7.3  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    23   7.3  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    22   9.7  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    22   9.7  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 310 NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLKYP 480
           +R+ F+++L+ V   AN      L      ++Q+F+  L Y       EYA  +  P
Sbjct: 782 SRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNP 838


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 132  AVIRLLSILFQQLQNFTIYDIIFSQLSISIDLLIGN*VQKYFSNSQ 269
            A+  +L++L  +     I D + + L +S    IGN ++ +F+NSQ
Sbjct: 1092 ALSLILAMLKYKPAPLYILDEVDAALDLSHTQNIGNMLKAHFTNSQ 1137


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 448 LSSIEGISSNLQMSALSNIHAEL 380
           LS+I   +S L++ ALS  HAEL
Sbjct: 700 LSTISHTASYLRLWALSLAHAEL 722


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 448 LSSIEGISSNLQMSALSNIHAEL 380
           LS++   +S L++ ALS  HAEL
Sbjct: 740 LSTVSHTASYLRLWALSLAHAEL 762


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 399 ERADICKLLEIPSI 440
           ERAD+C ++E+ S+
Sbjct: 25  ERADVCLMVELHSV 38


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 411,922
Number of Sequences: 2352
Number of extensions: 6584
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)