Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N06
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012539-1|AAH12539.1| 131|Homo sapiens mediator of RNA polymer... 118 1e-26
AF151883-1|AAD34120.1| 131|Homo sapiens CGI-125 protein protein. 118 1e-26
U63721-3|AAC13886.1| 633|Homo sapiens LIM-kinase protein. 29 8.7
U63721-2|AAC13885.1| 647|Homo sapiens LIM-kinase protein. 29 8.7
U62293-2|AAB17546.1| 633|Homo sapiens alternatively spliced LIM... 29 8.7
U62293-1|AAB17545.1| 647|Homo sapiens LIM-kinase1 protein. 29 8.7
D26309-1|BAA05371.1| 647|Homo sapiens LIM kinase protein. 29 8.7
AC005057-3|AAS07438.1| 596|Homo sapiens unknown protein. 29 8.7
AB209557-1|BAD92794.1| 365|Homo sapiens LIM domain kinase 1 iso... 29 8.7
>BC012539-1|AAH12539.1| 131|Homo sapiens mediator of RNA polymerase
II transcription, subunit 31 homolog (S. cerevisiae)
protein.
Length = 131
Score = 118 bits (283), Expect = 1e-26
Identities = 51/70 (72%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Frame = +1
Query: 274 MAAKVMPETEEQ-NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 450
MAA V ET++ NR+RFQ+ELEFVQCLANPNY++FLAQRGY K++ FVNYLKYL YW++
Sbjct: 1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60
Query: 451 PEYARYLKYP 480
PEYA+YLKYP
Sbjct: 61 PEYAKYLKYP 70
>AF151883-1|AAD34120.1| 131|Homo sapiens CGI-125 protein protein.
Length = 131
Score = 118 bits (283), Expect = 1e-26
Identities = 51/70 (72%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Frame = +1
Query: 274 MAAKVMPETEEQ-NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 450
MAA V ET++ NR+RFQ+ELEFVQCLANPNY++FLAQRGY K++ FVNYLKYL YW++
Sbjct: 1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60
Query: 451 PEYARYLKYP 480
PEYA+YLKYP
Sbjct: 61 PEYAKYLKYP 70
>U63721-3|AAC13886.1| 633|Homo sapiens LIM-kinase protein.
Length = 633
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 346 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 403
>U63721-2|AAC13885.1| 647|Homo sapiens LIM-kinase protein.
Length = 647
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 360 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 417
>U62293-2|AAB17546.1| 633|Homo sapiens alternatively spliced
LIM-kinase1 protein.
Length = 633
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 346 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 403
>U62293-1|AAB17545.1| 647|Homo sapiens LIM-kinase1 protein.
Length = 647
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 360 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 417
>D26309-1|BAA05371.1| 647|Homo sapiens LIM kinase protein.
Length = 647
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 360 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 417
>AC005057-3|AAS07438.1| 596|Homo sapiens unknown protein.
Length = 596
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 309 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 366
>AB209557-1|BAD92794.1| 365|Homo sapiens LIM domain kinase 1
isoform 1 variant protein.
Length = 365
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 QTVKMMAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV-NYLK 429
+T ++M K + +E+ + F E++ ++CL +PN + F+ K F+ Y+K
Sbjct: 255 ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIK 312
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,181,966
Number of Sequences: 237096
Number of extensions: 855891
Number of successful extensions: 1580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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