Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N06
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-3|CAB04242.1|  163|Caenorhabditis elegans Hypothetical pr...   100   5e-22
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical ...    27   7.2  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   9.5  
U39667-5|AAC69008.1|  190|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39647-6|AAM51529.1|  505|Caenorhabditis elegans Twik family of ...    27   9.5  
U39647-4|AAM51532.1|  562|Caenorhabditis elegans Twik family of ...    27   9.5  
U39647-2|AAM51530.1|  498|Caenorhabditis elegans Twik family of ...    27   9.5  
AF083651-1|AAC32862.1|  562|Caenorhabditis elegans putative pota...    27   9.5  
AF083644-1|AAC32855.1|  498|Caenorhabditis elegans putative pota...    27   9.5  

>Z81523-3|CAB04242.1|  163|Caenorhabditis elegans Hypothetical
           protein F32H2.2 protein.
          Length = 163

 Score =  100 bits (240), Expect = 5e-22
 Identities = 42/62 (67%), Positives = 52/62 (83%)
 Frame = +1

Query: 295 ETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLK 474
           E+ E  + RF+VE EFVQ LANPNY++FLAQRGY KE+ FVNYLKYL YW++P+YAR LK
Sbjct: 2   ESVESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKDPQYARCLK 61

Query: 475 YP 480
           +P
Sbjct: 62  FP 63


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 397 LKEQTFVNYLKYLQYWREPEYARYLKY 477
           L+E TF+  L++L YW    + R + Y
Sbjct: 875 LRESTFIRRLEHLMYWGRRRHERDILY 901


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 286 VMPETEEQNRIRFQVELEFVQ---CLANPNYIHFLA 384
           V+P   E N I   +E+EF+Q   C +  N +H +A
Sbjct: 236 VLPRDPEDNSIHSNMEMEFIQNTTCKSYTNSLHKIA 271


>AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical
           protein Y79H2A.12 protein.
          Length = 175

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 322 FQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYL 426
           FQ+  EF + L  P Y       GY    T+ N+L
Sbjct: 76  FQLAFEFGEILVTPVYFSSQVASGYESNDTYPNFL 110


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
           roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
 Frame = +1

Query: 307 QNRIRFQVELEFVQ-CLANPNYIH---------FLAQRGYLKEQTFVNYLKYL 435
           QN    Q+  + +Q  LANPN  H         F+A+R   +EQT VNY++ +
Sbjct: 706 QNMSSEQICHKILQNALANPNMTHAKIEKFVKPFMAERHLDQEQTIVNYIQMM 758


>U39667-5|AAC69008.1|  190|Caenorhabditis elegans Hypothetical
           protein C18A11.4 protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 343 VQCLANPNYIHFLAQRG-YLKEQTFVNYLKYLQYWREPEYARYL 471
           +    N   IHFL ++  +  ++  VN+ K L YW  P   ++L
Sbjct: 68  IDAFENMKDIHFLHEKQTWFFDKLDVNFGKELLYWNGPHIGQFL 111


>U39647-6|AAM51529.1|  505|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform a protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 FLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 471
           FL  + +L  Q +V Y  +L  W E  YA+Y+
Sbjct: 446 FLEVQEHLLRQPYVPYNVHLLRWIEDNYAQYM 477


>U39647-4|AAM51532.1|  562|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform d protein.
          Length = 562

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 FLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 471
           FL  + +L  Q +V Y  +L  W E  YA+Y+
Sbjct: 503 FLEVQEHLLRQPYVPYNVHLLRWIEDNYAQYM 534


>U39647-2|AAM51530.1|  498|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform b protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 FLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 471
           FL  + +L  Q +V Y  +L  W E  YA+Y+
Sbjct: 439 FLEVQEHLLRQPYVPYNVHLLRWIEDNYAQYM 470


>AF083651-1|AAC32862.1|  562|Caenorhabditis elegans putative
           potassium channel subunitn2P17m2-1 protein.
          Length = 562

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 FLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 471
           FL  + +L  Q +V Y  +L  W E  YA+Y+
Sbjct: 503 FLEVQEHLLRQPYVPYNVHLLRWIEDNYAQYM 534


>AF083644-1|AAC32855.1|  498|Caenorhabditis elegans putative
           potassium channel subunitn2P17m1-1 protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 FLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 471
           FL  + +L  Q +V Y  +L  W E  YA+Y+
Sbjct: 439 FLEVQEHLLRQPYVPYNVHLLRWIEDNYAQYM 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,147,942
Number of Sequences: 27780
Number of extensions: 156473
Number of successful extensions: 390
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)