Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N05
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    33   0.017
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    29   0.48 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    27   1.1  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   1.9  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   2.5  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   3.4  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    26   3.4  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   3.4  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   3.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   4.5  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   5.9  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -1

Query: 300 RLNQSIDSCLNEPSIPNSSS 241
           ++NQ +DSCLN PS P+SSS
Sbjct: 170 QINQHLDSCLNSPSSPSSSS 189


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -3

Query: 223 WSQRFVRLYRLLYFEPVSVIFEF-----LKPRFVNFSEGTTIAAVFFR*HIYWYVFLQAF 59
           W+  FV  Y + +   VSVIF       + P+ +N++    +A V     +YW+   +  
Sbjct: 465 WASHFVNAYAVCWTAFVSVIFLMPTVRPVTPQNMNYAV-VVLAGVLLFSLVYWWSGARKS 523

Query: 58  YIGMKI 41
           YIG +I
Sbjct: 524 YIGPRI 529


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 152 KKLEDYRHWFKVQESIKADESLRPGKPTNYDELFGIEGSFRQL 280
           K + DY H  K   S  ADE  RP K  N D +  +  S   L
Sbjct: 175 KDVLDYIHANKATASAHADEQERPAKKRNRDPIILLSPSASSL 217


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 5   EAFLKEKLKNRVYFHTDVKGLQKYIPVDMLPKEYGG 112
           +++L   + ++V F  + + LQ+YI  D + KE+GG
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGG 324


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 351 LFFKN-VTILPDVIQLFLVNLQYF 419
           +F KN VT+LPD ++LF ++  Y+
Sbjct: 453 IFEKNFVTVLPDFVKLFSISFGYW 476


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 KAHSDNYL*IDLIV*KPLFLKFNNIPDIHFLF 356
           K  +  Y  ID I  K +FL+F N+ ++ FLF
Sbjct: 89  KIRTAKYTPIDFIP-KNIFLQFQNVANLFFLF 119


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 318 LKFNNIPDIHFLFFKNVTILPDVIQLF--LVNLQYFKE*FIRVVKSQISH*IVY 473
           L+F   P+ ++L  +    L D  +LF  +V L YF E   R V +Q++H I Y
Sbjct: 197 LEFIQTPEYYYLVLE----LADGGELFHQIVRLTYFSEDLSRHVITQVAHAIRY 246


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 265 AFNS--EQFIVVCWFSWSQRFVRLYRLLYFEPVSVIFEFLKPRFVN 134
           AFNS  ++  VVC        + +Y +   + VS + EF  P FV+
Sbjct: 23  AFNSISDKIYVVCGLDNENPGIEIYEISENDDVSKLVEFDSPSFVS 68


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 5   EAFLKEKLKNRVYFHTDVKGLQKYIPVDMLPKEYGG 112
           + ++K ++  ++ F      L+KYI   ++P   GG
Sbjct: 256 KGWIKPEIAAKIVFTQSANDLEKYIDYSVIPTSLGG 291


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 244 IVVCWFSWSQRFVRLYRLLYFEPVSVIFE--FLKPRFVNFSEGTTIAAVFFR*HIYWYVF 71
           ++V    W +  + L R      V+ +      KP F  F EG   + +FF     W+ F
Sbjct: 4   VIVAIVRWERAMIGLLRHCAARLVAFVNNTTISKPYFSTFFEGGIHSLLFFYPKRNWWFF 63

Query: 70  LQAFYI 53
           ++  Y+
Sbjct: 64  IKMRYL 69


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/47 (21%), Positives = 24/47 (51%)
 Frame = -3

Query: 244 IVVCWFSWSQRFVRLYRLLYFEPVSVIFEFLKPRFVNFSEGTTIAAV 104
           ++  WF W+ + V +  +L   P++ +  F   + ++   G T+ A+
Sbjct: 73  LIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQ-LSIISGPTLGAL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,766
Number of Sequences: 5004
Number of extensions: 39631
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)