Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N05
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201...    28   3.3  
03_06_0589 + 34926560-34927198                                         27   5.8  

>02_01_0301 +
           2011707-2015423,2016982-2017182,2017670-2017786,
           2018030-2018122
          Length = 1375

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 205 RLYRLLYFEPVSVIFEFLKPRFVNFSEGTTIAAVFF 98
           +L+ L++F PV+ I +FLKP      +   ++  FF
Sbjct: 575 QLHTLIFFNPVADIGKFLKPMLKKLKKLRVLSLCFF 610


>03_06_0589 + 34926560-34927198
          Length = 212

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 220 SQRFVRLYRLLYFEPVSVIFEFLKPRFVNFSEGTTIAAVFFR 95
           S R   LYR + ++PV+V F F   R   F E  T+ A + R
Sbjct: 80  SLRNPNLYRGISYDPVAVAFSFNGTR---FDESATVPAFYHR 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,858
Number of Sequences: 37544
Number of extensions: 214385
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)