Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N05
(474 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97053-6|CAI19686.1| 342|Homo sapiens chromosome 20 open readin... 41 0.002
Z97053-5|CAI19685.1| 279|Homo sapiens chromosome 20 open readin... 41 0.002
BC003071-1|AAH03071.2| 342|Homo sapiens chromosome 20 open read... 41 0.002
AL132772-9|CAI18861.1| 342|Homo sapiens chromosome 20 open read... 41 0.002
AL132772-8|CAI18860.1| 279|Homo sapiens chromosome 20 open read... 41 0.002
U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer... 40 0.003
D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer... 40 0.004
BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha) tran... 40 0.004
L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding pro... 33 0.67
J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein. 33 0.67
BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding p... 33 0.67
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 31 2.7
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 31 2.7
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 31 2.7
>Z97053-6|CAI19686.1| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLKEK+ NR + H +D+ L +P +LPKEYGG
Sbjct: 242 FLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGG 276
>Z97053-5|CAI19685.1| 279|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 279
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLKEK+ NR + H +D+ L +P +LPKEYGG
Sbjct: 208 FLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGG 242
>BC003071-1|AAH03071.2| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLKEK+ NR + H +D+ L +P +LPKEYGG
Sbjct: 242 FLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGG 276
>AL132772-9|CAI18861.1| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLKEK+ NR + H +D+ L +P +LPKEYGG
Sbjct: 242 FLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGG 276
>AL132772-8|CAI18860.1| 279|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 279
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLKEK+ NR + H +D+ L +P +LPKEYGG
Sbjct: 208 FLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGG 242
>U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 40.3 bits (90), Expect = 0.003
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +2
Query: 11 FLKEKLKNRVYFHTD--VKGLQKYIPVDMLPKEYGGNGCTLTEVNKAW---LKKLEDYRH 175
FL EK+K R++ H + + L ++ P D+LP EYGG ++ ++ + W + K EDY
Sbjct: 213 FLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLR 271
Query: 176 WFKVQESIK 202
+ ESI+
Sbjct: 272 --SISESIQ 278
>D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 39.9 bits (89), Expect = 0.004
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +2
Query: 11 FLKEKLKNRVYFHTD--VKGLQKYIPVDMLPKEYGGNGCTLTEVNKAW---LKKLEDYRH 175
FL EK+K R++ H + + L ++ P D+LP EYGG ++ ++ + W + K EDY
Sbjct: 213 FLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLS 271
Query: 176 WFKVQESIK 202
+ ESI+
Sbjct: 272 --SISESIQ 278
>BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha)
transfer protein protein.
Length = 278
Score = 39.9 bits (89), Expect = 0.004
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +2
Query: 11 FLKEKLKNRVYFHTD--VKGLQKYIPVDMLPKEYGGNGCTLTEVNKAW---LKKLEDYRH 175
FL EK+K R++ H + + L ++ P D+LP EYGG ++ ++ + W + K EDY
Sbjct: 213 FLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLS 271
Query: 176 WFKVQESIK 202
+ ESI+
Sbjct: 272 --SISESIQ 278
>L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding
protein protein.
Length = 317
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLK KL RV+ H D+ G + I ++LP ++GG
Sbjct: 257 FLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 291
>J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein.
Length = 317
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLK KL RV+ H D+ G + I ++LP ++GG
Sbjct: 257 FLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 291
>BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding
protein 1 protein.
Length = 317
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 FLKEKLKNRVYFH-TDVKGLQKYIPVDMLPKEYGG 112
FLK KL RV+ H D+ G + I ++LP ++GG
Sbjct: 257 FLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 291
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 96 RKNTAAMVVPSLKLTKRGLRN--SKITDTGSKYRSL*RRTNL*DQENQQTTMNCSELKAH 269
+K+ A + PS+ KR RN +K+ D G K ++TN + TT+ ++K+
Sbjct: 1175 KKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQ 1234
Query: 270 S 272
S
Sbjct: 1235 S 1235
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 96 RKNTAAMVVPSLKLTKRGLRN--SKITDTGSKYRSL*RRTNL*DQENQQTTMNCSELKAH 269
+K+ A + PS+ KR RN +K+ D G K ++TN + TT+ ++K+
Sbjct: 1175 KKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQ 1234
Query: 270 S 272
S
Sbjct: 1235 S 1235
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 96 RKNTAAMVVPSLKLTKRGLRN--SKITDTGSKYRSL*RRTNL*DQENQQTTMNCSELKAH 269
+K+ A + PS+ KR RN +K+ D G K ++TN + TT+ ++K+
Sbjct: 1175 KKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQ 1234
Query: 270 S 272
S
Sbjct: 1235 S 1235
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,900,837
Number of Sequences: 237096
Number of extensions: 1228457
Number of successful extensions: 2220
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -