Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N05
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  ICYRKNTAAMVVPSLKLTKRGLRNSKI 167
           IC     +A+ V +L L  RG+R +++
Sbjct: 283 ICLVTFASALAVVTLNLHHRGVRGTRV 309



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 219 DQENQQTTMNCSELKAHSDNYL 284
           D++NQ  T NC   +  +D++L
Sbjct: 46  DEKNQILTTNCWVTQIWTDHHL 67


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 53  RYENIPYFL 27
           +Y N+PYFL
Sbjct: 217 KYSNVPYFL 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,658
Number of Sequences: 438
Number of extensions: 2844
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)