Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N04
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 31 0.075
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.17
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 29 0.53
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 0.70
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 0.92
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 27 1.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.6
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 2.1
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.1
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 27 2.1
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 2.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 2.8
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 26 2.8
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 26 3.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 4.9
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 4.9
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 4.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 6.5
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 25 6.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 8.6
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.6
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 31.5 bits (68), Expect = 0.075
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 270 PPDHILPTDDRTKEVFPSNHAKEDRPHPVYIKTEEQRNALFSKKNMEKDVSVD 428
P D I+P ++ + F D+P + +EE + + FS ++ KD ++D
Sbjct: 81 PKDVIIPEEEYHTDTFNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTID 133
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.3 bits (65), Expect = 0.17
Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +3
Query: 117 EDKITDFGDNSNRREDT-DIEEDYEEVPQYISNHAYPSDKITETFEPMFIPSPPDHILPT 293
+D + +NS+ E+ D++E+ ++P+ +SN ++K+ + P+ D +L T
Sbjct: 3965 KDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSL--NEKLWDE------PNEED-LLET 4015
Query: 294 DDRTKEVFPSNH-----AKEDRPHPVYIKTEEQRNALFSKKNMEKDVSVDLVMESDRVSP 458
+ ++ E +N+ +KED + K +++ ++ M DV +D ++ D
Sbjct: 4016 EQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKE---DEEEMSDDVGIDDEIQPDIQEN 4072
Query: 459 HYLPP 473
+ PP
Sbjct: 4073 NSQPP 4077
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 28.7 bits (61), Expect = 0.53
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 482 LWVWGQIMWANSI*LHNQINRDIFLHILLTK*CVSLFFCFYVYWMRSI 339
LW+ GQ++W S + + +F+ + L+ LFF F VY ++ I
Sbjct: 767 LWIIGQLLWLISAYNLEMLGKSVFIPLWLSG---LLFFFFNVYELKII 811
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 0.70
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 159 EDTDIEEDYEEVPQYISNHAYPSDKITETFEPMFIPSPPDHIL 287
ED D EE++EE+ + Y SD TE P SP D L
Sbjct: 87 EDADDEEEFEEI-----DAGYSSDSSTEDVAPGLYESPYDENL 124
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 390 FSKKNMEKDVSVDLVMESDRVSPHYLPPDPKL 485
F KKN+E + +D ++E + + P PP P+L
Sbjct: 905 FLKKNLE-EFGLDELLEDEDIRPRSKPPRPRL 935
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 318 PSNHAKEDRPHPVYIKTEEQRNALFSKKNMEKDVSVDL 431
P + D P+++ TE Q + + + K+++VDL
Sbjct: 207 PIDTGSVDETEPIWVSTESQLSDMLKELQNSKEIAVDL 244
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 153 RREDTDIEEDYEEVPQYISNHAYPSDKITETFEPMFIPSPPDH 281
R +D+D++++ + N+A S+ T T +P F P H
Sbjct: 534 RLQDSDVDDEVATIRSLKQNNATNSEVETVTNDPSFSQQPGTH 576
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 26.6 bits (56), Expect = 2.1
Identities = 24/104 (23%), Positives = 43/104 (41%)
Frame = +3
Query: 165 TDIEEDYEEVPQYISNHAYPSDKITETFEPMFIPSPPDHILPTDDRTKEVFPSNHAKEDR 344
+DI+ YE + ++A+P DK+ E F + H +P D + +D
Sbjct: 370 SDIDYMYEYRDFTVESNAFPKDKMMEFFNS--LQQSNQHYVPIIDAAIYAANPINRSDDV 427
Query: 345 PHPVYIKTEEQRNALFSKKNMEKDVSVDLVMESDRVSPHYLPPD 476
+P Y E R +F +N ++ + V V P + P+
Sbjct: 428 YYPYY---EGVRRDIF-LRNPDRSLYVGNVWPGFTTFPDFTNPE 467
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.1
Identities = 27/113 (23%), Positives = 43/113 (38%)
Frame = +3
Query: 165 TDIEEDYEEVPQYISNHAYPSDKITETFEPMFIPSPPDHILPTDDRTKEVFPSNHAKEDR 344
T +DYEE+P+ +S + + T + S DH P + E H E
Sbjct: 517 TTKRKDYEELPEEVSETSINIAEHTPVLK--HTSSLLDHHSPLATSSSE-----HEMEAT 569
Query: 345 PHPVYIKTEEQRNALFSKKNMEKDVSVDLVMESDRVSPHYLPPDPKLSKEHSQ 503
P P +K +R L S + + E +V L K S +++Q
Sbjct: 570 PSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKNTQ 622
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 26.6 bits (56), Expect = 2.1
Identities = 24/99 (24%), Positives = 37/99 (37%)
Frame = +3
Query: 126 ITDFGDNSNRREDTDIEEDYEEVPQYISNHAYPSDKITETFEPMFIPSPPDHILPTDDRT 305
I + +SN + I EDY E I H +I + + +P P LP+
Sbjct: 192 IANHSVHSNAEDINIINEDYIE----IGRHRKEKGRIIDV-DINKLPKPTQEALPSAPTI 246
Query: 306 KEVFPSNHAKEDRPHPVYIKTEEQRNALFSKKNMEKDVS 422
K V P H + I ++ A F ++ K S
Sbjct: 247 KSVAPGRHQLSSLVE-MAISQKDNFEAYFEQQRSNKKAS 284
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 378 RNALFSKKNMEKDVSVDLVMESDRVSPHYLPP 473
++++F ++ EKDV +++E+ HY+ P
Sbjct: 411 KHSVFFEEAFEKDVYAPMIVETQEEYDHYIAP 442
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 132 DFGDNSNRREDTDIEEDYEEVPQYISNHAYPSD 230
DF D E+ +EE+YE + ++ NH +D
Sbjct: 189 DFEDEEEEVEE-QVEEEYEPIIDFVLNHRKRAD 220
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 335 FGMVTWEYFFSSIISR*YMIWWRRYKHRLERFSNFI 228
F + ++YFF+ I + +W RY H ++ N I
Sbjct: 127 FIVPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMI 162
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 9 VDSSTLQPAINTGFRPESIVVESGFKPIIREPLMAGEDKITDFGDNSN 152
+D +TL+P +N F P+ S FK +++ E K+ G +N
Sbjct: 336 IDLNTLEPHLNGPFTPDLATPISKFKEAVKKNDWPQELKVGLIGSCTN 383
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 4.9
Identities = 21/98 (21%), Positives = 43/98 (43%)
Frame = +3
Query: 3 TRVDSSTLQPAINTGFRPESIVVESGFKPIIREPLMAGEDKITDFGDNSNRREDTDIEED 182
T + ++ PA P+ + +E P+ R+P+ AG ++T DN +E+
Sbjct: 581 TTTTTPSITPADPVPTSPKPLAIE----PVKRKPVHAGNLEVTSVSDNKLGATVQVVEQK 636
Query: 183 YEEVPQYISNHAYPSDKITETFEPMFIPSPPDHILPTD 296
++ ++ PS + EP+ +PS ++ D
Sbjct: 637 VDDKADALTKP--PS--LDAVKEPIPVPSVETSVVAQD 670
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 204 ISNHAYPSDKITETFEPMFIPSPPD 278
+ N Y D I F+P +IPS D
Sbjct: 189 LDNFYYYQDHIDRIFDPQYIPSDQD 213
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = +3
Query: 303 TKEVFPSNHAKEDRPHPVYIKTEEQRNALFSKKNMEKDVSVDLVMESDRVSPHYLPPDPK 482
TK+ S+ D T E LFS E ++ +L +SD + DP
Sbjct: 673 TKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSKTETCLTYELAFDSDEIDSLTKKKDPL 732
Query: 483 LSKEHS 500
+H+
Sbjct: 733 TKIDHT 738
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 267 SPPDHILPTDDRTKEVFPSNHAKEDR 344
S P + TDD+ ++VFPS H K R
Sbjct: 69 SNPGRYVDTDDQ-EDVFPSKHRKGTR 93
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 60 SIVVESGFKPIIREPLMAGEDKITDFGDNSNRREDTDIEEDYEEVPQYI 206
S++ + K I+ EPL E F N+ E EE Y+++ + I
Sbjct: 138 SLMSQVTSKEILYEPLKDLEANYPKFLKNAKETEKQGFEEQYQKIQKCI 186
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 57 ESIVVESGFKPIIREPLMAGEDKITDFGD---NSNRREDTDIEEDYEEVPQYISNHAYPS 227
E I+ ++ +R ++ I D G+ N ++ + ++ D + PQ S A P+
Sbjct: 134 EEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKREANVFSDTQSAPQLKSGKALPA 193
Query: 228 D 230
D
Sbjct: 194 D 194
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 8.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 138 GDNSNRREDTDIEEDYEEVPQYISNH 215
G+ +N +DT + + E+V +++ NH
Sbjct: 580 GEFTNSLDDTPTQSNVEKVDRFLENH 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,650
Number of Sequences: 5004
Number of extensions: 39795
Number of successful extensions: 157
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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