Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N04
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.34 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   3.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 371 FCFYVYWMRSIFFGMVTWEYFFSSIISR-*YMIWWRRYKHRLER 243
           FC    W   I F  VTW  + +S ++   Y  W R ++    R
Sbjct: 360 FCSQCIWQEKIVFAAVTWLGWINSGMNPVIYACWSRDFRRAFVR 403


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 333 KEDRPHPVYIKTE----EQRNALFSKKNMEKDVSVDLVMESDRVSPHYLPPDPKLSKE 494
           ++ +P  V  KT+    E+ NAL ++      ++ D   E++   PHY     K  K+
Sbjct: 38  RKPKPAMVEEKTQLRYLEELNALRTELGASTKLATDTTSENEENYPHYQMSGAKQKKK 95


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 74  LYYDGFRSKPSIYSW 30
           L+Y   +SKP +Y W
Sbjct: 142 LHYTVDKSKPKVYQW 156


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 74  LYYDGFRSKPSIYSW 30
           L+Y   +SKP +Y W
Sbjct: 147 LHYTVDKSKPKVYQW 161


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 397 LLNSAFLCSSVFMYTGCGRSSLAWL 323
           L+N+AFLC +  + +    +S  WL
Sbjct: 10  LINAAFLCLASTILSESAGTSCKWL 34


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 74  LYYDGFRSKPSIYSW 30
           L+Y   +SKP +Y W
Sbjct: 147 LHYTVDKSKPKVYQW 161


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 IILTEEKILTLKKIMKKFLNTF 207
           II + +K LTL +I   F NTF
Sbjct: 517 IIESPDKQLTLNEIYNWFQNTF 538


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 210 NHAYPSDKITETFEPMFIPSPPDHILPTDDRTKEVFPSN 326
           N+A  SD  ++  E  + PS  +     D  + +V P N
Sbjct: 326 NYASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDN 364


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 210 NHAYPSDKITETFEPMFIPSPPDHILPTDDRTKEVFPSN 326
           N+A  SD  ++  E  + PS  +     D  + +V P N
Sbjct: 326 NYASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDN 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,510
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)