Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N03
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    30   0.22 
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   3.6  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    25   6.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   6.3  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   6.3  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    25   8.3  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    25   8.3  

>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 146 NKNQ*FLNSMADDLRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDG 325
           N+N+  +N+      N KLQL  VE + L+ +Q             + EL Q+    +D 
Sbjct: 21  NENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKINEL-QEFYLLEDL 79

Query: 326 DPKVHNIHGSSNDDDVTASLLVAAEND 406
              V N    +++D +   L    EN+
Sbjct: 80  AKPVTNAGADADEDTIVKDLKKELENE 106


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 350 GSSN-DDDVTASLLVAAENDAVEKFYAKWNVG 442
           GS+N  D +   L++ +END  EK    W VG
Sbjct: 260 GSTNWQDGMIGILVILSENDFEEKKCDSWQVG 291


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 164 LNSMADDLRNYKLQLQQVEAALLTDS 241
           LN ++ D+RNY+  L + E  LL DS
Sbjct: 50  LNEVSSDIRNYQASLTK-ELKLLVDS 74


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 296 SIQLLPPNQLLTSGALHSVSR*ATLLLPVAIAIYNSLNHQP 174
           S  L P    L  GA H   +    ++P+AI  Y  L H P
Sbjct: 185 SYSLKPCLLPLKKGAFHLAVQAQVPIIPIAIQTYGHLFHPP 225


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 287 IELTQDLIKSQDGDPKVHNIHGSSNDDDVTASLLVAAENDAVEK 418
           + +  D +KS D +    ++   +ND    AS+L  AEN+  E+
Sbjct: 269 VSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQ 312


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 335 VHNIHGSSN-DDDVTASLLVAAENDAVEKFYAKWNVGEKC-LAKWRADGM 478
           +HN+H       D+  S++       V+ F+ +WN G+K     W  D +
Sbjct: 346 IHNVHFQLQLMRDMRESIIKDEFPSFVKNFFHEWNHGDKSNYPSWAVDAL 395


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 325 TILTFYKILCQFNYFLQISF*LQ-ELFIL*VGKQRCFYL 212
           T  TF +I C  NYFL+  F +  ++  L + K  C  L
Sbjct: 26  TFPTFSQIPCNINYFLEQKFQVPVDIRALVLDKDNCITL 64


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 155 GFYLD*IDFVKIYTTNTFTLFY*VQYFPNNLSKLQFIDISIINGPGFKPS 6
           G Y   + F   Y     TL +  ++F  N+ K   + ISI++ PG  P+
Sbjct: 53  GLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPN 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,776
Number of Sequences: 5004
Number of extensions: 32477
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)