Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N03
(496 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011234-1|AAH11234.1| 238|Homo sapiens survival motor neuron d... 56 9e-08
AL360182-9|CAI15482.1| 238|Homo sapiens survival motor neuron d... 56 9e-08
AF107463-1|AAC84148.1| 238|Homo sapiens splicing factor protein. 56 9e-08
AF083385-1|AAC64086.1| 238|Homo sapiens 30kDa splicing factor p... 56 9e-08
U80017-3|AAC52048.1| 294|Homo sapiens survival motor neuron pro... 35 0.18
U43883-1|AAC50473.1| 294|Homo sapiens survival motor neuron pro... 35 0.18
U21914-1|AAA64505.1| 293|Homo sapiens U18423; it is not known i... 35 0.18
U18423-1|AAA66242.1| 294|Homo sapiens spinal muscular atrophy d... 35 0.18
BC070242-1|AAH70242.1| 282|Homo sapiens survival of motor neuro... 35 0.18
BC062723-1|AAH62723.1| 294|Homo sapiens survival of motor neuro... 35 0.18
BC015308-1|AAH15308.1| 294|Homo sapiens survival of motor neuro... 35 0.18
BC000908-1|AAH00908.1| 282|Homo sapiens SMN1 protein protein. 35 0.18
AC005031-2|AAC62262.1| 294|Homo sapiens survival of motor neuro... 35 0.18
AC004999-1|AAC83178.1| 294|Homo sapiens survival motor neuron 1... 35 0.18
>BC011234-1|AAH11234.1| 238|Homo sapiens survival motor neuron
domain containing 1 protein.
Length = 238
Score = 55.6 bits (128), Expect = 9e-08
Identities = 37/108 (34%), Positives = 52/108 (48%)
Frame = +2
Query: 173 MADDLRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDGDPKVHNIHG 352
+A L +YK QLQQVEAAL + +N VIELT+DL+ +Q +
Sbjct: 5 LAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSE-------- 56
Query: 353 SSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATI 496
L ++++ A + W VG+KC+A W DG YEA I
Sbjct: 57 ----------TLASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEI 94
>AL360182-9|CAI15482.1| 238|Homo sapiens survival motor neuron
domain containing 1 protein.
Length = 238
Score = 55.6 bits (128), Expect = 9e-08
Identities = 37/108 (34%), Positives = 52/108 (48%)
Frame = +2
Query: 173 MADDLRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDGDPKVHNIHG 352
+A L +YK QLQQVEAAL + +N VIELT+DL+ +Q +
Sbjct: 5 LAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSE-------- 56
Query: 353 SSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATI 496
L ++++ A + W VG+KC+A W DG YEA I
Sbjct: 57 ----------TLASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEI 94
>AF107463-1|AAC84148.1| 238|Homo sapiens splicing factor protein.
Length = 238
Score = 55.6 bits (128), Expect = 9e-08
Identities = 37/108 (34%), Positives = 52/108 (48%)
Frame = +2
Query: 173 MADDLRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDGDPKVHNIHG 352
+A L +YK QLQQVEAAL + +N VIELT+DL+ +Q +
Sbjct: 5 LAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSE-------- 56
Query: 353 SSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATI 496
L ++++ A + W VG+KC+A W DG YEA I
Sbjct: 57 ----------TLASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEI 94
>AF083385-1|AAC64086.1| 238|Homo sapiens 30kDa splicing factor
protein.
Length = 238
Score = 55.6 bits (128), Expect = 9e-08
Identities = 37/108 (34%), Positives = 52/108 (48%)
Frame = +2
Query: 173 MADDLRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDGDPKVHNIHG 352
+A L +YK QLQQVEAAL + +N VIELT+DL+ +Q +
Sbjct: 5 LAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSE-------- 56
Query: 353 SSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATI 496
L ++++ A + W VG+KC+A W DG YEA I
Sbjct: 57 ----------TLASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEI 94
>U80017-3|AAC52048.1| 294|Homo sapiens survival motor neuron
protein SMN protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>U43883-1|AAC50473.1| 294|Homo sapiens survival motor neuron
protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>U21914-1|AAA64505.1| 293|Homo sapiens U18423; it is not known if
this copy of the gene protein.
Length = 293
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 90 QWKVGDKCSAIWSEDGCIYPATI 112
>U18423-1|AAA66242.1| 294|Homo sapiens spinal muscular atrophy
determining gene protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>BC070242-1|AAH70242.1| 282|Homo sapiens survival of motor neuron
2, centromeric protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>BC062723-1|AAH62723.1| 294|Homo sapiens survival of motor neuron
1, telomeric protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>BC015308-1|AAH15308.1| 294|Homo sapiens survival of motor neuron
1, telomeric protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>BC000908-1|AAH00908.1| 282|Homo sapiens SMN1 protein protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>AC005031-2|AAC62262.1| 294|Homo sapiens survival of motor neuron 1
product protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
>AC004999-1|AAC83178.1| 294|Homo sapiens survival motor neuron 1
protein protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.18
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
+W VG+KC A W DG Y ATI
Sbjct: 91 QWKVGDKCSAIWSEDGCIYPATI 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,608,219
Number of Sequences: 237096
Number of extensions: 1143843
Number of successful extensions: 5623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5623
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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