Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N03
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006816-4|AAK85507.1|  239|Caenorhabditis elegans Smn (survival...    41   4e-04
AC006816-5|AAP46266.1|   44|Caenorhabditis elegans Smn (survival...    36   0.012
AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical ...    31   0.61 
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    29   2.4  
AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AC006816-4|AAK85507.1|  239|Caenorhabditis elegans Smn (survival of
           motor neuron protein)related protein 1, isoform a
           protein.
          Length = 239

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +2

Query: 173 MADDLRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDGD 328
           M ++L +YKLQLQQVEAALL D  N            +I L +DL ++   +
Sbjct: 1   MEEELASYKLQLQQVEAALLGDPTNVELLKLKEDLGEIISLQEDLAETDKAE 52


>AC006816-5|AAP46266.1|   44|Caenorhabditis elegans Smn (survival of
           motor neuron protein)related protein 1, isoform b
           protein.
          Length = 44

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 173 MADDLRNYKLQLQQVEAALLTDSQN 247
           M ++L +YKLQLQQVEAALL D  N
Sbjct: 1   MEEELASYKLQLQQVEAALLGDPTN 25


>AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical
           protein Y50D4C.3 protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 428 KWNVGEKCLAKWRADGMFYEATI 496
           +W VG +CLA W  DG  Y AT+
Sbjct: 554 QWRVGAQCLATW-TDGNLYPATV 575


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
            protein protein10, isoform b protein.
          Length = 1189

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 365  DDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFY 484
            DD+  + +VA ++DA++   A     E  + +W A GM Y
Sbjct: 1056 DDIAPTAVVAGDHDALKAACAMVRPFENQIPEWGATGMVY 1095


>AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical
           protein Y116F11B.6 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 19  PGPLIILMSINCNFDKLF 72
           PGP+ I    NCN+D++F
Sbjct: 50  PGPVPIFYDNNCNYDEVF 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,460,461
Number of Sequences: 27780
Number of extensions: 181356
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)