Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N02
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      31   0.14 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.33 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.00 
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    28   1.00 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   1.7  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    27   2.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   4.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   4.0  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    26   4.0  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   4.0  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.3  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   7.0  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.3  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 350 HWFTLFPSFHTILRTLMIYIAFIWTTFMAFYRINVH-ALNSFPELFRVFIWPVIIFCYNF 174
           HWF LFP F   +     Y   + T  +    I+ + ALN+   +   F++  +IF  +F
Sbjct: 236 HWFALFPIFRKYIHVFSFYADMLMTLVLI---ISAYIALNAVASVVIAFVFLSLIFFISF 292


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 402 LPSGWEAVYDEGTGHYYFWN--MHNNLVSWIPP 494
           LPSGW A +D   G Y++ N    N    W PP
Sbjct: 10  LPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 420 AVYDEGTGHYYFWNMHNNLVSWIPP 494
           A++D     YYFW+   N  SW  P
Sbjct: 194 AIWDPSQQAYYFWDTLTNTTSWNNP 218


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 387 LEYWPLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
           +E  PLP+GWE    E   H YF +      +W  P
Sbjct: 239 VEKGPLPAGWEMRLSEDY-HVYFVDHSTKTTTWSDP 273


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 399 PLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPPAHP 503
           PLPSGWE +    T   YF + +    +W  P  P
Sbjct: 346 PLPSGWE-MRLTNTARVYFVDHNTKTTTWDDPRLP 379



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 390 EYWPLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
           +Y  LP GWE   D   G  Y+ + +    +WI P
Sbjct: 203 QYGRLPPGWERRTD-NLGRTYYVDHNTRSTTWIRP 236


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 399 PLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPPAHPRA 509
           PLPSGWE +    +   YF + +    +W  P  P A
Sbjct: 365 PLPSGWE-MRLTNSARVYFVDHNTKTTTWDDPRLPSA 400



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 EYWPLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPPA 497
           +Y  LP GWE   D   G  Y+ + +    +W  PA
Sbjct: 234 QYGRLPPGWERRAD-SLGRTYYVDHNTRTTTWTRPA 268


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 369 EIKNKTLEYWPLPSGWEAVYDEGTGHYYFWNMHNNLV 479
           +   K   Y  L + WE ++ + TG    W+ +N ++
Sbjct: 115 QFDRKVQTYKNLDTVWEKIHHDSTGKPVSWSQYNTII 151


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 414 WEAVYDEGTGHYYFWNMHNNLVSWIPPAHPRA 509
           ++ +YD+ T     +N H N +  I  ++P+A
Sbjct: 114 YKMIYDKPTDFEMLYNFHKNRIEAIQASNPKA 145


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 350 HWFTLFPSFHTILRTLMIYIAFIW 279
           H++  F + HTI R  M+ I FI+
Sbjct: 519 HYYRFFRTSHTISRKFMLSIEFIY 542


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 300 HECSQYCVKRWKQGKPVPDEKYV 368
           HE  +   K WK+G P+P   Y+
Sbjct: 185 HEDEKTVKKDWKRGDPIPRPTYI 207


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 288 FYLDNLYGLLSDQRSRPQFLPRTVPSVH 205
           +Y   +YG L DQ+     + R++P++H
Sbjct: 339 YYSKTMYGTLIDQQVYESLVQRSMPNLH 366


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 397 GRCLRDGRQCMMKE 438
           GRCL+ G+QC+ K+
Sbjct: 39  GRCLKAGKQCIWKQ 52


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 332 PSFHTILRTLMIYIAFI 282
           PS H+ILR L++ +AF+
Sbjct: 711 PSLHSILRFLLLLLAFL 727


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 278 TTFMAFYRINVHALNSFPELF 216
           T++M FYR +VH L++  E F
Sbjct: 681 TSWMLFYRWDVHELSNLAERF 701


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 360 KYVEIKNKTLEYWPLPSGWEAVYDEGTGHYYFWNMHN----NLVSWIPPAHPR 506
           KY   K  TL  W  P GW+   + G       N  N    NL +   PA+PR
Sbjct: 34  KYYMDKIGTLPEWLRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPR 86


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -2

Query: 438 FLHHTLPPIPKAAANILKFYSL---FLHIFRQALVYLVSIVSHNTENTHDIYCFYLDNLY 268
           F  HT  PI ++   +   Y L      I+++AL+Y    V   +++T+D    YLD +Y
Sbjct: 406 FEEHTTLPIQQSLREMSATYILNNEINWIYQEALLYACCSVDAASDDTYD---DYLDPIY 462


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 288  SNIYHECSQYCVKRWKQ 338
            S I  EC Q+ ++RW+Q
Sbjct: 2680 SRIIDECMQFSLRRWQQ 2696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,826
Number of Sequences: 5004
Number of extensions: 47652
Number of successful extensions: 146
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)