Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N02
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 38 0.004
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 36 0.020
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722... 36 0.027
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 35 0.036
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 35 0.047
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56... 33 0.14
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 32 0.25
11_03_0142 + 10675764-10675991,10676533-10676943 30 1.0
06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683 30 1.0
12_01_0794 + 7285100-7285369,7285931-7286338 30 1.3
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 30 1.3
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 29 2.3
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 28 4.1
12_02_0899 - 24142210-24142293,24142589-24142634,24142773-241428... 28 4.1
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 28 4.1
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057... 28 5.4
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640... 27 7.1
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 27 7.1
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 27 9.4
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP--AHPRAAP 515
LP WE D+ TG Y++N + W PP +P AP
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPPTAVNPGVAP 274
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPPAHP 503
LP GW D +G YF+N W P P
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAP 221
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 35.9 bits (79), Expect = 0.020
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 255 PIKGHKGCPNKSNIYHECSQYCVKR 329
P K C N SN YHECS YC+++
Sbjct: 9 PGKSRPDCVNSSNPYHECSDYCLRQ 33
Score = 35.9 bits (79), Expect = 0.020
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 267 HKGCPNKSNIYHECSQYCVKRWKQGKPVP 353
H C N SN YH CS +C +R KP P
Sbjct: 48 HPHCINASNPYHACSNFCFRRIIHAKPSP 76
>06_03_1362 +
29571324-29571564,29571746-29571921,29571972-29572251,
29572949-29573085,29573174-29573401
Length = 353
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 267 HKGCPNKSNIYHECSQYCVKRWKQGK 344
H C N SN YH CS+YC KR K
Sbjct: 54 HPDCINASNPYHVCSEYCFKRIADAK 79
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 261 KGHKGCPNKSNIYHECSQYCVKRWKQGKP-VPDEK 362
K C N SN +HECS YC+++ + K + DE+
Sbjct: 11 KSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQ 45
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSW-IPPAHPRAAP 515
LP W + D TG+ YFWN V + P A P ++P
Sbjct: 23 LPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSSP 61
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 34.7 bits (76), Expect = 0.047
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPPAHP 503
LP W + D TG+ Y+WN N+ + P P
Sbjct: 19 LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>01_01_0074 -
561304-562131,562219-562425,563034-563084,563310-563408,
564476-564622,564750-564851,565713-565928,566061-566192,
566249-566310,567618-567746,568426-568567,568735-568830,
568924-569000,569070-569148,569229-569297,569589-569703,
570614-570777,570847-571002
Length = 956
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = -2
Query: 528 QHTLSVQHADVPAGSKTPNCYACSKNNSDQFLHHTLPPIPKAAANILKFYSLFLHIFRQA 349
QH+L++ A +P+G+ P+C C+ S Q LP PK + L+ ++ + Q
Sbjct: 323 QHSLALP-AQLPSGADLPSCTECNDGES-QIRMSKLPGNPKHKRS-LEAQTVHKNALAQL 379
Query: 348 LVYLVSIVSHNTENTHDIYCF 286
Y + S N E T C+
Sbjct: 380 FQYALHFFSTNIEMTWSEKCY 400
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 32.3 bits (70), Expect = 0.25
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 276 CPNKSNIYHECSQYCVKRWKQ 338
CPN N +HEC+++C + K+
Sbjct: 177 CPNAGNPFHECTEHCAAKMKE 197
Score = 31.1 bits (67), Expect = 0.58
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 276 CPNKSNIYHECSQYC 320
CPN SN +H C+QYC
Sbjct: 230 CPNASNPFHICAQYC 244
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 237 EGVNVDPIKGHKGCPNKSNIYHECSQYCVKR 329
EG + D K CPN N +H C+++C +
Sbjct: 102 EGADGDGKKVDPRCPNAPNPFHVCTEHCAAK 132
Score = 29.1 bits (62), Expect = 2.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 276 CPNKSNIYHECSQYC 320
CPN +N +H C+ YC
Sbjct: 11 CPNAANPFHRCADYC 25
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 276 CPNKSNIYHECSQYCVKR 329
C N SN YH+C ++C ++
Sbjct: 280 CVNASNPYHKCGEHCKRK 297
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 399 PLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
PLP WE D +G Y+ N SW+ P
Sbjct: 64 PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683
Length = 583
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +2
Query: 74 AAAACFSGSACQTRFIENKFRYYKSSSFSAS 166
AA CF AC +R RYYKSS FS S
Sbjct: 104 AAGGCFDRGACLSR--HESPRYYKSSPFSPS 132
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 399 PLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
PLP WE D +G Y+ N SWI P
Sbjct: 78 PLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 204 NEHSEQFWEGIEGVNV---DPIKGHKGCPNKSNIYHECSQYCVKRWKQGKPVPDEKYVEI 374
N ++ W+ I NV P +G S + + + QGK VP EK +++
Sbjct: 326 NAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQL 385
Query: 375 KNKTLEY 395
+NK +++
Sbjct: 386 RNKLMKF 392
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 276 CPNKSNIYHECSQYCVKRWKQGKPVPDEKYVEIKNKTLEYWPLPSGWEAVYDEGT 440
CP N E + K W +G+PV ++ +K + W P W V+ GT
Sbjct: 507 CPTLDNGKPEDLTHFQKHWVKGEPVIVQQV--LKKMSCLSWEPPDMWSKVHGTGT 559
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 525 HTLSVQHADVPAGSKTPNCYACSKNNS 445
H ++++ P G K P YAC +NS
Sbjct: 275 HDWAIRNGSCPEGKKVPKDYACVSSNS 301
>12_02_0899 -
24142210-24142293,24142589-24142634,24142773-24142886,
24143445-24143566,24144361-24144480,24144581-24144664,
24144813-24144914,24145589-24145604,24147929-24148329
Length = 362
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 294 YCFYLDNLYGLLSDQRSRPQFLPR-TVPSVH--LACHN 190
YC Y ++ G + ++R P F PR + SV L CHN
Sbjct: 215 YCIYDSDIDGSIQEKRKIPPFPPRECIGSVDEWLRCHN 252
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 414 WEAVYDEGTGHYYFWNMHNNLVSWIPP 494
W ++D YYF+N+ +W PP
Sbjct: 326 WRVLWDPFYSRYYFYNILTQESTWYPP 352
>07_01_1089 +
10004773-10004831,10004924-10005033,10005631-10005749,
10005833-10005930,10006834-10006921,10006993-10007127,
10007211-10007313,10007506-10007618,10007821-10007868
Length = 290
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 324 KRWKQGK-PVPDEKYVEIKNKTLEYWP 401
K W++ K P EK +E+ NK LE+WP
Sbjct: 74 KLWERVKLPRNYEKAMEVINKHLEFWP 100
>07_01_1096 -
10063016-10063117,10063530-10063580,10063924-10064033,
10064367-10064454,10064543-10064603,10065198-10065295,
10065394-10065512,10066593-10066702,10066801-10066859
Length = 265
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 324 KRWKQGK-PVPDEKYVEIKNKTLEYWP 401
K W++ K P EK +E+ N+ LE+WP
Sbjct: 74 KLWERVKLPRNYEKAIEVINRHLEFWP 100
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
LP GWE +D TG ++ + + +W P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 485 PRHQIVMHVPKIIVTSSFIIHCLPSRRQRP 396
PRH I + IV + +II+ L RR+RP
Sbjct: 192 PRHVIYVIGAAAIVGTGYIIYLLVKRRRRP 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,954
Number of Sequences: 37544
Number of extensions: 321486
Number of successful extensions: 926
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -