Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N02
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016687-2|AAC48091.2| 280|Caenorhabditis elegans Hypothetical ... 102 2e-22
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 34 0.073
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 34 0.073
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 31 0.68
AC087082-1|AAG37982.2| 157|Caenorhabditis elegans Hypothetical ... 31 0.68
AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein... 29 2.1
AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe... 29 2.1
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 29 2.1
AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe6... 29 2.1
AF045639-8|AAC02566.1| 649|Caenorhabditis elegans Hypothetical ... 28 4.8
Z75531-2|CAA99804.2| 278|Caenorhabditis elegans Hypothetical pr... 27 6.3
AY728063-1|AAU43724.1| 278|Caenorhabditis elegans cadmium-induc... 27 6.3
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 27 6.3
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 27 6.3
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 6.3
Z81481-5|CAB63436.1| 405|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF016687-2|AAC48091.2| 280|Caenorhabditis elegans Hypothetical
protein T21D12.3 protein.
Length = 280
Score = 102 bits (244), Expect = 2e-22
Identities = 52/120 (43%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = +3
Query: 159 VQANEEIIAEDYDRPNEHSEQFWEGIEGVNVDPIKGHKGCPNKSNIYHECSQYCVKRWKQ 338
V+ EE+IAE+Y++ E + F E G GCPNK N YH C ++C W
Sbjct: 17 VKQEEEVIAENYEKEPE-KKSFEENSAGA--------PGCPNKWNQYHVCLEFCYDHWGD 67
Query: 339 GKP---VPDEKYVEIKNKTLEYWPLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPPAHPRA 509
G P +P E+YV+ KN+ L +PLP W VYDEG YYFWN + V W P HPRA
Sbjct: 68 GTPEYRLP-ERYVQNKNRMLAKFPLPENWVEVYDEGLAKYYFWNKTTDEVCWYSPRHPRA 126
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 33.9 bits (74), Expect = 0.073
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 399 PLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
PLP GWE D T YF N N W P
Sbjct: 325 PLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 33.9 bits (74), Expect = 0.073
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 399 PLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
PLP GWE D T YF N N W P
Sbjct: 325 PLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.52
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 441 GHYYFWNMHNNLVSWIPPAH 500
GHYY WN+ +N W PAH
Sbjct: 194 GHYY-WNLFDNSTRWTAPAH 212
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 387 LEYWPLPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
+E P+P GWE YD G YF + ++ +W P
Sbjct: 200 VEQLPMPQGWEMCYD-SDGVRYFKDHNSKTTTWDDP 234
>AC087082-1|AAG37982.2| 157|Caenorhabditis elegans Hypothetical
protein Y92H12BM.1 protein.
Length = 157
Score = 30.7 bits (66), Expect = 0.68
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 414 WEAVYDEGTGHYYFWNMHNNLVSWIPP 494
W ++D TG YY++N +++ W P
Sbjct: 8 WWELFDSKTGRYYYYNASSSVTKWQKP 34
>AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein
protein.
Length = 577
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
LP GWE +++ G+ Y+W++ + + PP
Sbjct: 147 LPPGWEK-HEDPQGYSYYWHVDSGTIQRQPP 176
>AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform c protein.
Length = 554
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
LP GWE +++ G+ Y+W++ + + PP
Sbjct: 124 LPPGWEK-HEDPQGYSYYWHVDSGTIQRQPP 153
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
LP GWE +++ G+ Y+W++ + + PP
Sbjct: 265 LPPGWEK-HEDPQGYSYYWHVDSGTIQRQPP 294
>AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform b protein.
Length = 640
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 402 LPSGWEAVYDEGTGHYYFWNMHNNLVSWIPP 494
LP GWE +++ G+ Y+W++ + + PP
Sbjct: 235 LPPGWEK-HEDPQGYSYYWHVDSGTIQRQPP 264
>AF045639-8|AAC02566.1| 649|Caenorhabditis elegans Hypothetical
protein B0212.1 protein.
Length = 649
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 530 RSTLCRCSTRMCRRDPRHQIVMHVPKI 450
R TL +CS + C + R +I + +PKI
Sbjct: 131 RGTLEKCSPKKCSTNSRQKINIRIPKI 157
>Z75531-2|CAA99804.2| 278|Caenorhabditis elegans Hypothetical
protein C54D10.2 protein.
Length = 278
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +3
Query: 153 PSVQANEEIIAEDYDRPNEHSEQFWEGIEGVNVDPIKGHKGCPNKSNIYHECSQYCVKRW 332
PS++A E +DY+R + QF K K CPN S + C + +
Sbjct: 28 PSIRAKPEPYKKDYNRGTVYLYQF------------KRTKKCPNLSPFCMKVEVLC-RAY 74
Query: 333 KQGKPVPDEKYVEIKNKTLEY 395
K + DEK + +N TL +
Sbjct: 75 KVPYEICDEKLIWSRNGTLPF 95
>AY728063-1|AAU43724.1| 278|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-3 protein.
Length = 278
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +3
Query: 153 PSVQANEEIIAEDYDRPNEHSEQFWEGIEGVNVDPIKGHKGCPNKSNIYHECSQYCVKRW 332
PS++A E +DY+R + QF K K CPN S + C + +
Sbjct: 28 PSIRAKPEPYKKDYNRGTVYLYQF------------KRTKKCPNLSPFCMKVEVLC-RAY 74
Query: 333 KQGKPVPDEKYVEIKNKTLEY 395
K + DEK + +N TL +
Sbjct: 75 KVPYEICDEKLIWSRNGTLPF 95
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -2
Query: 531 AQHTLSVQHADVPAGSKTPNCYACSKNN 448
+QH + H D P G CY C N
Sbjct: 135 SQHKEAYTHKDSPCGDTQLECYRCGSKN 162
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -2
Query: 531 AQHTLSVQHADVPAGSKTPNCYACSKNN 448
+QH + H D P G CY C N
Sbjct: 135 SQHKEAYTHKDSPCGDTQLECYRCGSKN 162
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = +3
Query: 219 QFWEGIEGVNVDPI--KGHKGCPNKSNIYHECSQYCVKRWKQGKPVPDEKYVEIKNKTLE 392
QFW E + G +G N+ N +EC YC + K YV+ K ++
Sbjct: 604 QFWYNAETKTCESFLYTGCQGNNNRFNSLNECQSYCKNINAEPKCPQGRAYVDFSGKFMQ 663
>Z81481-5|CAB63436.1| 405|Caenorhabditis elegans Hypothetical
protein C38D9.7 protein.
Length = 405
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 354 DEKYVEIKNKTLEYWPLPSGWEAVYDEGT 440
DE + + KT+ Y P+P+G +Y+ T
Sbjct: 165 DEARLFLNEKTVNYCPVPNGCTIIYENRT 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,945
Number of Sequences: 27780
Number of extensions: 275132
Number of successful extensions: 990
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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