Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N02
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 474  NCYACSKNNSDQFLHHTL 421
            +CY C   N + F+ H+L
Sbjct: 1067 DCYVCYSPNDEDFVLHSL 1084


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 524 TLCRCSTRMCRR 489
           TLC+C  + CRR
Sbjct: 669 TLCKCDAQNCRR 680


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 474  LVSWIPPAHPRAAPTE 521
            LVSW PP+ P    T+
Sbjct: 1197 LVSWRPPSQPNGVITQ 1212


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 330 WKQGKPVPDEKYVEIKNKTLE 392
           WK+G PV   K + +   TLE
Sbjct: 192 WKEGDPVQVVKNLHLPRFTLE 212


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 330 WKQGKPVPDEKYVEIKNKTLE 392
           WK+G PV   K + +   TLE
Sbjct: 192 WKEGDPVQVVKNLHLPRFTLE 212


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 279 PNKSNIYHECSQYCVKRWKQGKP 347
           PN   I+++     + RWK G P
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVP 75


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 465 HNNLVSWIPPA 497
           H  LV W PPA
Sbjct: 137 HQGLVEWKPPA 147


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 477  VSWIPPAHPRAAPTE 521
            +SW+PP  P    T+
Sbjct: 1232 ISWLPPLEPNGIITK 1246


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 477  VSWIPPAHPRAAPTE 521
            +SW+PP  P    T+
Sbjct: 1228 ISWLPPLEPNGIITK 1242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,213
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)