Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M23
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   122   2e-29
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   1.3  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   6.7  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   6.7  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    24   8.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   8.9  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  122 bits (294), Expect = 2e-29
 Identities = 58/106 (54%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
 Frame = -3

Query: 384 MVNVPKQRRTY--XXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 211
           MVN+PK R+TY             V+QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 210 XXXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 73
                 K+VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 90  PSSSCHHQAQSAYNASGPPVTSPCSLHIP 176
           P+SS  + A + YNAS PP   P S + P
Sbjct: 287 PTSSYGNGASTNYNASRPPSNHPHSSNYP 315


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 377 TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAE 270
           T      H  +N +  KFT+      L  GTP + E
Sbjct: 195 TMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVE 230


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 371 GTFTIFTSVQHGDNKRQKKKKK 436
           G F+ F    +GDNK+ +KK K
Sbjct: 7   GNFSNFGDGANGDNKKDQKKDK 28


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 83  ICPFLFLSPPSSKCLQRFRATCDLTLQSAHSRRSTIFFVVFAFFL 217
           +C F    P  S  +QRFR+ C   L    S    IF V F+ F+
Sbjct: 554 VCGFNIYFPLMSPWIQRFRSRCCFRLGLLFS----IFVVGFSSFI 594


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 117 QSAYNASGPPVTSPCSLHIPDE 182
           QS  N+  PP++SP S   P E
Sbjct: 328 QSCTNSPSPPLSSPASSASPSE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,664
Number of Sequences: 5004
Number of extensions: 23766
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)