Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M23
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 127 3e-30
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 127 3e-30
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 2.6
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 2.6
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 2.6
U43282-2|AAY86313.1| 73|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z83316-7|CAB05890.1| 134|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 27 6.0
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 27 6.0
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 127 bits (307), Expect = 3e-30
Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Frame = -3
Query: 384 MVNVPKQRRTYXXXX-XXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 208
MVNVPK RRT+ V+QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 207 XXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 73
KIVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 127 bits (307), Expect = 3e-30
Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Frame = -3
Query: 384 MVNVPKQRRTYXXXX-XXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 208
MVNVPK RRT+ V+QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 207 XXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 73
KIVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 23 RVFFFFFENYLIY*AA*NWIICPFLFLSPPSSKCLQRFRATCDLTLQS 166
RVFFF + N L+ ++I F+ LS P++K L R C+ + S
Sbjct: 1146 RVFFFQYRNGLLAFGLLTYLIAYFIRLS-PTTKTLGRILIICNSVIWS 1192
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 23 RVFFFFFENYLIY*AA*NWIICPFLFLSPPSSKCLQRFRATCDLTLQS 166
RVFFF + N L+ ++I F+ LS P++K L R C+ + S
Sbjct: 1146 RVFFFQYRNGLLAFGLLTYLIAYFIRLS-PTTKTLGRILIICNSVIWS 1192
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 23 RVFFFFFENYLIY*AA*NWIICPFLFLSPPSSKCLQRFRATCDLTLQS 166
RVFFF + N L+ ++I F+ LS P++K L R C+ + S
Sbjct: 1133 RVFFFQYRNGLLAFGLLTYLIAYFIRLS-PTTKTLGRILIICNSVIWS 1179
>U43282-2|AAY86313.1| 73|Caenorhabditis elegans Hypothetical
protein T22E5.7 protein.
Length = 73
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 84 FVPSSSCHHQAQSAYNASGPPVTSPCSLHIPDEVQFSL 197
F+ + + ++ + +G P+T PCS+ + +E FSL
Sbjct: 10 FIRRQTDDGEMKAYWGKAGAPITLPCSISLFNEESFSL 47
>Z83316-7|CAB05890.1| 134|Caenorhabditis elegans Hypothetical
protein B0379.6 protein.
Length = 134
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 247 GLWWSIQTHLQKEGKNYKENCTSSGMCR 164
GLW + HL K G+ NC G R
Sbjct: 48 GLWRQKRAHLMKGGRRLTRNCVGCGGSR 75
>Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 306 CTETLCELCDICIFCSMFCAVWVRSPFLRLF 398
C +T C C+IC + C +WV F F
Sbjct: 134 CPKT-CNACNICEDANKMCPIWVPRGFCSKF 163
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 303 FCTETLCELCDICIFCSMFCAVWVRSPFLRLFSTATTN 416
FC E L L I + FCAVWV + + FS T+
Sbjct: 85 FCYE-LSVLTHFLISINRFCAVWVPLKYEKWFSRKNTS 121
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 183 LRLECADCKVRSQVALKRCKHFELGGDKK 97
+ +E A+CK R + + K+CK E ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,286,378
Number of Sequences: 27780
Number of extensions: 148463
Number of successful extensions: 458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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