Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M21
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.2  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.2  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   5.6  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.6  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.3  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    25   7.3  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    24   9.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   9.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 142 KGCFFTSYMFTSITRHILQTFITAISTNSP 53
           + C   SY FTS +  +L+     + TN P
Sbjct: 440 RSCSTNSYAFTSSSLGLLEQLAAGVQTNEP 469


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 143 QRLFLHVIHVHIHNKTYSTDFYYCH*HKFTKINTYEEI 30
           + +F H + +    + Y TD +YC   K   ++T + +
Sbjct: 124 ESIFYHFVSLQSFIRKYLTDVFYCSAQKVILLSTDDSV 161


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 438 LVSKYYLYREHGKLHCLLLFFVYLSWKPVECLTCLFSQCLVLLSFHLIAG 289
           LV+ YYL      L  +   F++L  KP+  L C       LL F  + G
Sbjct: 133 LVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFTQLLG 182


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 99  LVMDVNMYDVKKQPLESYLETLLGNPLSSTEI 194
           L+  ++  D+KK  +ESYL T L +P +  EI
Sbjct: 81  LLEPMSWADLKKFGIESYLVTGLEHPSTDVEI 112


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/67 (22%), Positives = 23/67 (34%)
 Frame = -3

Query: 402 KLHCLLLFFVYLSWKPVECLTCLFSQCLVLLSFHLIAGYHIMXXXXXXXXX*SDNTSALV 223
           K  CL +      W+    L C    C+V     L   Y I+           D +   V
Sbjct: 9   KRFCLFVCLERFQWRGAIFLVCYPLYCVVCFVSVLCRLYCILMSAASATQTICDQSILHV 68

Query: 222 RHIQNMQ 202
             ++NM+
Sbjct: 69  HGVENMK 75


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 282 YGILQSNGKITRPDIEKINRSSIQLASNLS 371
           Y I + N  I RP  E +NR   Q+ S+++
Sbjct: 210 YDICRRNLDIERPSYENLNRLIAQVVSSIT 239


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 143 QRLFLHVIHVHIHNKTYSTDF 81
           + L  HV +VH+HN+    DF
Sbjct: 553 EHLAQHVTYVHMHNEQPKMDF 573


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 146 FQRLFLHVIHVHIHNKTYSTDFYY 75
           F+  F +  H+HIH +T+    YY
Sbjct: 743 FKYYFGNAGHLHIHGRTFPIKDYY 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,766
Number of Sequences: 5004
Number of extensions: 41603
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)