Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M21
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816... 29 1.8
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 3.1
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 28 4.2
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 28 4.2
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 27 5.5
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 27 5.5
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 27 5.5
01_06_1118 - 34636919-34637031,34637032-34637082,34637250-346372... 27 9.6
01_06_1047 + 34092702-34094249 27 9.6
>04_04_0994 +
29980076-29980441,29980900-29980998,29981075-29981612,
29982211-29982494,29983014-29983034,29983238-29983452,
29983538-29983691,29984089-29984220
Length = 602
Score = 29.1 bits (62), Expect = 1.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +3
Query: 171 NPLSSTEIPSFACFECAALVQKYYHFKDKC 260
N +S + + C++C + ++ Y HF+ C
Sbjct: 482 NKMSCSNCGQYFCYQCNSAIEGYEHFRGSC 511
>04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 28.3 bits (60), Expect = 3.1
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = +3
Query: 123 DVKKQPLESYLETLLGNPLSSTEIPSFACFECAALVQKYYHFKDKCIRGQATLYGILQSN 302
+ K+ LESY+ TLL + E AC E + ++ ++ +LQ
Sbjct: 1037 EASKRFLESYINTLLMVCSYALEAELMACNEGVKMALQWTILPVIIETDCLSVTQMLQ-E 1095
Query: 303 GKITRPDIEKINRSSIQLAS---NLSIQKIAKD-NVIYH 407
GK+ R + + R + +L S N +IQKI +D N + H
Sbjct: 1096 GKMDRSGLAFVTRETKELLSGRWNFTIQKIHRDQNRVSH 1134
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 150 YLETLLGNPLSSTEIPSFACFECAALVQKYYHFKDKCIR 266
Y+E G F C+ CAA + K H+ KC R
Sbjct: 290 YVEKSAGCTFMRCRCGFFFCYNCAAPMTKLVHYCKKCNR 328
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +3
Query: 114 NMYDVKKQPLESYLETLLGNPLSSTEIPSFACFECAALVQKY 239
N++DV + ++ + + LLG+ L + + C +C L +++
Sbjct: 2048 NLWDVSDKDIDRFSKALLGSWLQENFVAAKNCSKCCQLTREF 2089
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 84 LLLLPLAQIHQDKHIRRN 31
LLLLP++ HQD+H RR+
Sbjct: 10 LLLLPVSWCHQDRHGRRH 27
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 15 NNKYFYFFVCVYLGEFVLMAVIKVCRICLVMDVNMYDVKKQPLESYLE 158
+NK C+Y F +++V+ + + + V++ V+K PLESY +
Sbjct: 161 HNKMAVRCQCLYKAAFQVLSVVGILQDEVDPMVSVMKVEKAPLESYAD 208
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 438 LVSKYYLYREHGKLHCLLLFFVYLSWKPVECLTCLFSQCLVLLSFHL 298
L Y ++R G L+CL F+Y L CLFS VL L
Sbjct: 608 LYLSYCVFRPTGGLNCLRSLFLYEVRITGHELGCLFSNSFVLEQLEL 654
>01_06_1118 -
34636919-34637031,34637032-34637082,34637250-34637287,
34637344-34637468,34637552-34637714,34638910-34639083,
34639161-34639426
Length = 309
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 78 IKVCRICLVMDVNMYDVKKQPLESYLETL---LGNPLSSTEIPSFA 206
+KVC+ + N+Y+ +K+ L Y E L + +PL S+ S A
Sbjct: 187 LKVCKQQIATYKNIYNKEKEKLNEYEEALKRAIYHPLQSSHTSSIA 232
>01_06_1047 + 34092702-34094249
Length = 515
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 318 PDIEKINRSSIQLASNLSIQKIAKDNVIYHVHDKDSTCLLNKELAT 455
P +E+ R L +++ A DN+ V D+D CL +A+
Sbjct: 163 PLLERAGRDGRTLDVQSVLERFAFDNICRVVFDEDPACLAKDSVAS 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,451
Number of Sequences: 37544
Number of extensions: 224410
Number of successful extensions: 479
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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