Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M21
(458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92782-6|CAB07191.1| 319|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical pr... 29 1.6
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 28 2.8
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 28 2.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 2.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 2.8
Z81016-3|CAB02664.1| 326|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z70211-2|CAA94158.2| 272|Caenorhabditis elegans Hypothetical pr... 27 6.6
U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical p... 27 8.7
U41542-14|ABO16444.1| 331|Caenorhabditis elegans Hsn abnormal m... 27 8.7
U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal m... 27 8.7
U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal m... 27 8.7
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z92782-6|CAB07191.1| 319|Caenorhabditis elegans Hypothetical
protein F14F8.7 protein.
Length = 319
Score = 29.5 bits (63), Expect = 1.2
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +3
Query: 24 YFYFFVC-VYLGEFVLMAVIKVCRICLVMDVNMYDVKKQPLESYLETLLGNPLSS--TEI 194
Y FF+ L EF+ ++ + ICL++++ KK ++ Y T L + + T I
Sbjct: 216 YLIFFLTETVLFEFIPSILLLITTICLIIELRKNQKKKTSIKQYRSTRLVAAIKADVTVI 275
Query: 195 PSFACFECAALVQKYYHFKDKCIRGQA-TLYGILQSNGKIT 314
SF A F R A L+G+ N +T
Sbjct: 276 ASFLSTLNIATHGPICFFVSTQYRNTARKLFGMKNKNSSVT 316
>Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical
protein W07G1.6 protein.
Length = 360
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 390 LLLFFVYLSWKPVECLTCLFSQCLVLLSFHLIAGYH 283
+L+FF + S KPV ++ + C V+L+F L+ Y+
Sbjct: 184 ILVFFYFFSLKPVLIISTILLSC-VILTFFLLLQYN 218
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 287 YPAIKW-KDNKTRH*ENKQVKHSTG 358
+P IKW KD+K NKQV+H G
Sbjct: 793 HPNIKWTKDDKPIDMSNKQVRHENG 817
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 287 YPAIKW-KDNKTRH*ENKQVKHSTG 358
+P IKW KD+K NKQV+H G
Sbjct: 808 HPNIKWTKDDKPIDMSNKQVRHENG 832
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 287 YPAIKW-KDNKTRH*ENKQVKHSTG 358
+P IKW KD+K NKQV+H G
Sbjct: 16619 HPNIKWTKDDKPIDMSNKQVRHENG 16643
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 287 YPAIKW-KDNKTRH*ENKQVKHSTG 358
+P IKW KD+K NKQV+H G
Sbjct: 16634 HPNIKWTKDDKPIDMSNKQVRHENG 16658
>Z81016-3|CAB02664.1| 326|Caenorhabditis elegans Hypothetical
protein F21G4.5 protein.
Length = 326
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 189 EIPSFACFECAALVQKYYHFKDKCIRGQATLYGILQSNGKITRPDI-EKINRSSIQLASN 365
EIPSF C +C F + + + ++ + + + +P+I +KI + SN
Sbjct: 65 EIPSFQCTKCRKQEVNVRDFVEHYLEHEVKVHRVSYEHLGVVKPEINDKIKEVVATVQSN 124
Query: 366 LSIQK 380
+I+K
Sbjct: 125 GNIKK 129
>Z70211-2|CAA94158.2| 272|Caenorhabditis elegans Hypothetical
protein K11E4.2 protein.
Length = 272
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 299 KWKDNKTRH*ENKQV--KHSTGFQLKYTKNSKRQCNL 403
++K+N+ H + +++ +H G +K + KR+CN+
Sbjct: 113 RYKNNQISHYKYREIDGRHYLGIVMKIGRTEKRECNV 149
>U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical
protein K06C4.9 protein.
Length = 492
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 228 LVRHIQNMQMMVFPLNLEDFLIMFLNTIPKVVSSRHTCSHP*QDI-FYRLLLLPLAQIHQ 52
++ HI N+ ++++ + ++F KV+S+ TC + I FY+ + ++
Sbjct: 414 VIHHISNLLLVIYSASTVFIYLIFSTKYRKVLSTCVTCGYKISRIPFYKNCIQKYGRVEY 473
Query: 51 DKHIRRNKN 25
R+ K+
Sbjct: 474 GIESRKTKD 482
>U41542-14|ABO16444.1| 331|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform c protein.
Length = 331
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 108 DVNMYDVKKQPLESYLETLLGNPLSSTEIPSFACFECAALVQKYYHFKDKCIRGQATL 281
D N++ QP + ++ + SS S CF+C K +DKC + T+
Sbjct: 213 DKNIHISHDQPSPTVSDSHISGGSSSHSGESLKCFDCQVARGKLVAVEDKCRAYEKTI 270
>U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform a protein.
Length = 390
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 108 DVNMYDVKKQPLESYLETLLGNPLSSTEIPSFACFECAALVQKYYHFKDKCIRGQATL 281
D N++ QP + ++ + SS S CF+C K +DKC + T+
Sbjct: 272 DKNIHISHDQPSPTVSDSHISGGSSSHSGESLKCFDCQVARGKLVAVEDKCRAYEKTI 329
>U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform b protein.
Length = 392
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 108 DVNMYDVKKQPLESYLETLLGNPLSSTEIPSFACFECAALVQKYYHFKDKCIRGQATL 281
D N++ QP + ++ + SS S CF+C K +DKC + T+
Sbjct: 274 DKNIHISHDQPSPTVSDSHISGGSSSHSGESLKCFDCQVARGKLVAVEDKCRAYEKTI 331
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 26.6 bits (56), Expect = 8.7
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +3
Query: 171 NPLSSTEIPSFACFECAALVQKYYHFKDKCIRGQATLYGILQSNGKITRPDIEKI--NRS 344
N + STE S + + + + +HF+D C R +L+ N TR + + N S
Sbjct: 1160 NNIGSTETSSKSTEQSEDIDKLDHHFEDACERKYCETDTMLKENPDSTRKMAKNLNENES 1219
Query: 345 SIQLASNLSIQ---KIAKDNVIY---HVHDKDSTCLLNKEL 449
I + + + + +IA+ ++ Y V DS+C+ E+
Sbjct: 1220 GINIIKDSNSEYKSEIAEMDLFYANFEVPLPDSSCIKISEM 1260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,728,621
Number of Sequences: 27780
Number of extensions: 232482
Number of successful extensions: 615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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