Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M20
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 28 0.71
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 2.9
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 3.8
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 5.0
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 5.0
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 5.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 5.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 5.0
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 25 5.0
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 24 8.7
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 0.71
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 251 EPGDEPCLLLSVHPHHGVHVLRDDELPLEVASALGPDVQF 370
+PGD LL HP+HG + E LEV D+ +
Sbjct: 105 QPGDNVVLLDGEHPNHGFGWISLQEAGLEVRLIPSKDIYY 144
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 323 ELPLEVASALGPDVQFVLKYI 385
ELPL+ ASA D++ LKYI
Sbjct: 649 ELPLQEASAFSEDLRSRLKYI 669
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 161 RALSSESLLGDMCGFPLYFSPRL 93
R L + S+ +CG PLY +P +
Sbjct: 198 RYLQTSSMAETLCGSPLYMAPEI 220
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 99 TSLFDFDTNLIIYFPHMIKSNN---GLTTDKL 13
+ L D +L++ F H+IK+NN GLT +++
Sbjct: 299 SKLDPLDASLLLAFCHIIKNNNPDDGLTREEM 330
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 108 FLATSLF-DFDTNLIIYFPHMIK 43
FL S F + TNL +Y PH K
Sbjct: 248 FLINSFFINVQTNLFVYHPHFFK 270
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 247 TAVEYVAACRLRCHRYMCWCPPSTTLAPH 161
T ++ +L HRY+ W LAPH
Sbjct: 363 TLRHFIRPRKLADHRYLNWDSEENNLAPH 391
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 224 LSSAVSPVHVLVSTQYHSRTTRALSSES-LLGDMCGFPLYFSPR 96
+SS++ + + R +SSES LLGD+CG L+ R
Sbjct: 477 ISSSLGSDEIYKACLLFLRKLEDVSSESVLLGDICGIVLHLLQR 520
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 260 DEPCLLLSVHPHHGVHVLRDDELPLEVASALGPD 361
D+ C L VH H V V P+ A A+ PD
Sbjct: 484 DKTCRLWDVHRGHSVRVFNGHTQPV-TAVAIAPD 516
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 224 GRDVLDCCREPGDEPCLLLSVHPHHGVHVLRDDELPLEVASALGPDVQFVLKYID 388
G V R+PG L H VH+++ D LE A+ +V V+ +D
Sbjct: 30 GTVVFASARKPGAATKLQEWSKSHSNVHIIKLDVSSLESANEAAQEVTKVVDAVD 84
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 24.2 bits (50), Expect = 8.7
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +2
Query: 224 GRDVLDCCREPGDEPCLLLSVHPHHGVHVLRDDELPLEVASALGPDVQFVLKYID 388
G V R PG L H VH+++ D L A V+ V+K ID
Sbjct: 31 GVTVFASARGPGSASELKDWSKTHSNVHIIKLDVTSLRSAKDAAMQVEKVVKCID 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,306
Number of Sequences: 5004
Number of extensions: 26649
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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