Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M20
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    28   2.8  
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606...    28   3.7  
11_02_0108 - 8372390-8372914                                           27   4.9  
03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119...    27   8.5  
03_01_0142 + 1133064-1133999                                           27   8.5  

>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 220 RLRCHRYMCWCPPSTTLAPHAHYHRN 143
           R  C RY  W P ST  +P   Y R+
Sbjct: 382 RSSCRRYQIWGPESTPTSPRVGYGRS 407


>03_05_1011 +
           29658144-29658310,29659531-29659676,29660526-29660602,
           29660682-29660804,29661817-29661924,29661995-29662075,
           29662157-29662309,29662469-29662540,29662745-29662863,
           29662958-29663071,29663176-29663221,29664865-29664933,
           29665662-29665808,29666410-29666706
          Length = 572

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 114 SLFLATSLFDFDTNLI 67
           SLFL+TSLFDF+  LI
Sbjct: 404 SLFLSTSLFDFEDRLI 419


>11_02_0108 - 8372390-8372914
          Length = 174

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 307 VHSVVWMNA*QQARLVARFPTAVEYVAACRLR 212
           +H  +W ++ +Q RLVA   TAV     C  R
Sbjct: 34  IHVWIWQDSGRQRRLVAGMATAVRTARGCSQR 65


>03_01_0150 +
           1191410-1191697,1191818-1191941,1192063-1192121,
           1192565-1192629,1192838-1192931,1193005-1193085,
           1193176-1193287,1193949-1194036,1194440-1194561,
           1194636-1194973,1195579-1195870,1195946-1196016,
           1197741-1197849,1198760-1198803,1198804-1198847,
           1200431-1200524
          Length = 674

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 161 RALSSESLLGDMCGFPLYFSPRL 93
           R+L  E+L   MCG P Y +P +
Sbjct: 179 RSLVQENLAATMCGSPSYMAPEI 201


>03_01_0142 + 1133064-1133999
          Length = 311

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 274 QARLVARFPTAVEYVAACRLRCHRYMCWCPPSTTLAPHAHYH 149
           + RL   +    + VAA +   HR+    P S   AP AH+H
Sbjct: 131 RGRLFIDWRRRPDVVAALQPPTHRFAHHLPSSIPFAPWAHHH 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,496,503
Number of Sequences: 37544
Number of extensions: 184141
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)