Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M20
         (430 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL358780-2|CAI13978.2|  818|Homo sapiens novel protein (FLJ16611...    31   1.3  
AK131456-1|BAD18601.1|  762|Homo sapiens protein ( Homo sapiens ...    31   1.3  
AJ318887-1|CAC83011.2| 1090|Homo sapiens ASPP1 protein protein.        31   2.2  
BC058918-1|AAH58918.1| 1127|Homo sapiens tumor protein p53 bindi...    30   3.8  
BC046150-1|AAH46150.1|  693|Homo sapiens TP53BP2 protein protein.      30   3.8  
AJ318888-1|CAC83012.1| 1128|Homo sapiens ASPP2 protein protein.        30   3.8  

>AL358780-2|CAI13978.2|  818|Homo sapiens novel protein (FLJ16611)
           protein.
          Length = 818

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 265 LVARFPTAVEYVAACRLRCHRYMCWCPPSTTLAPHAHYHRNHY 137
           L ++ P A    A C  R H    +CPP      H H+H +H+
Sbjct: 218 LCSKHPAAAAAGATCLERFHLVNGFCPPPHHHHHHHHHHHHHH 260


>AK131456-1|BAD18601.1|  762|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16611 fis, clone TESTI4011829. ).
          Length = 762

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 265 LVARFPTAVEYVAACRLRCHRYMCWCPPSTTLAPHAHYHRNHY 137
           L ++ P A    A C  R H    +CPP      H H+H +H+
Sbjct: 218 LCSKHPAAAAAGATCLERFHLVNGFCPPPHHHHHHHHHHHHHH 260


>AJ318887-1|CAC83011.2| 1090|Homo sapiens ASPP1 protein protein.
          Length = 1090

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 140 MIPMIVRVWCESGTGWXXXXXXXXXXXXGRDVLDCCREPGDEPCLLLSVHPHHGVHVLRD 319
           M+PMI+ V+  S                 RDV++ C+EPG+  C L  V        +  
Sbjct: 1   MMPMILTVFL-SNNEQILTEVPITPETTCRDVVEFCKEPGEGSCHLAEVW-RGNERPIPF 58

Query: 320 DELPLEVASALGP---DVQFVLKYIDFETGSTDK 412
           D +  E     GP   +V+F L++ D  T ++++
Sbjct: 59  DHMMYEHLQIWGPRREEVKFFLRHEDSPTENSEQ 92


>BC058918-1|AAH58918.1| 1127|Homo sapiens tumor protein p53 binding
           protein, 2 protein.
          Length = 1127

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 227 RDVLDCCREPGDEPCLLLSV 286
           RDV+D C+EPG+  C L  V
Sbjct: 28  RDVVDLCKEPGESDCHLAEV 47


>BC046150-1|AAH46150.1|  693|Homo sapiens TP53BP2 protein protein.
          Length = 693

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 227 RDVLDCCREPGDEPCLLLSV 286
           RDV+D C+EPG+  C L  V
Sbjct: 29  RDVVDLCKEPGESDCHLAEV 48


>AJ318888-1|CAC83012.1| 1128|Homo sapiens ASPP2 protein protein.
          Length = 1128

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 227 RDVLDCCREPGDEPCLLLSV 286
           RDV+D C+EPG+  C L  V
Sbjct: 29  RDVVDLCKEPGESDCHLAEV 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,632,963
Number of Sequences: 237096
Number of extensions: 949816
Number of successful extensions: 2478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2475
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)