Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M20
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    27   4.3  
AL031633-22|CAB97238.1|  512|Caenorhabditis elegans Hypothetical...    27   4.3  
AJ582072-1|CAE46542.1|  512|Caenorhabditis elegans flavin monoox...    27   4.3  
AF160248-1|AAD45518.1|  860|Caenorhabditis elegans ribonuclease ...    27   4.3  
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    27   5.7  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    27   7.5  
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical
           protein R05H5.7 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 268 RLVARFPTAVEYVAACRLRCHRYMCWCPPSTTLAPHAHYHRNHY 137
           +++   P+    VA C  R  R + WC   +  APH    +N +
Sbjct: 131 KIITECPSPSSLVAHCAFR-RRQVNWCESDSECAPHLAPRQNRF 173


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
           protein F26E4.10 protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 166 PHAHYHRNHY*GTCVVSLFISRHVFI*F*YKFNNLFSTY 50
           P  H  R  Y G  VV L +S H++    + F    +TY
Sbjct: 686 PILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATY 724


>AL031633-22|CAB97238.1|  512|Caenorhabditis elegans Hypothetical
           protein Y39A1A.19 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 287 HPHHGVHVLRDDELPLEVASA---LGPDVQ-FVLKYIDFETGS 403
           HP  G H+  +DELP  +AS    + P ++ F    I FE G+
Sbjct: 278 HPAMGAHITVNDELPNRIASGTVRVKPGIKSFTETSIHFEDGT 320


>AJ582072-1|CAE46542.1|  512|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 287 HPHHGVHVLRDDELPLEVASA---LGPDVQ-FVLKYIDFETGS 403
           HP  G H+  +DELP  +AS    + P ++ F    I FE G+
Sbjct: 278 HPAMGAHITVNDELPNRIASGTVRVKPGIKSFTETSIHFEDGT 320


>AF160248-1|AAD45518.1|  860|Caenorhabditis elegans ribonuclease
           protein.
          Length = 860

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 166 PHAHYHRNHY*GTCVVSLFISRHVFI*F*YKFNNLFSTY 50
           P  H  R  Y G  VV L +S H++    + F    +TY
Sbjct: 460 PILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATY 498


>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
           protein Y75B8A.24 protein.
          Length = 2121

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 89  NKDVARNKEGNHTCPLIMIPMIVRVWCE 172
           +K + ++K G  TC L   P I   WCE
Sbjct: 900 DKTMRKDKSGLWTCMLAAAPRIFLEWCE 927


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 305 HVLRDDELPLEVASALGPDVQFVLKYIDFETGSTDKS 415
           HVL D +   EV S LG D + VLK  + ET S  KS
Sbjct: 679 HVLLDVDKYREVISVLGDDSEEVLK--ELETYSQKKS 713


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 90  FDFDTNLIIYFPHMIK 43
           FD DTN I Y+PH+ K
Sbjct: 141 FDCDTNYIKYYPHISK 156


>Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC376.7c protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 176 HSRTTRALSSESLLGDMCGFPLYFSP 99
           HS TT  +   S  GD  G PL+ SP
Sbjct: 148 HSSTTETMHDFSNFGDNMGSPLFQSP 173


>Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical
           protein ZC376.7b protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 176 HSRTTRALSSESLLGDMCGFPLYFSP 99
           HS TT  +   S  GD  G PL+ SP
Sbjct: 148 HSSTTETMHDFSNFGDNMGSPLFQSP 173


>Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical
           protein ZC376.7a protein.
          Length = 488

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 176 HSRTTRALSSESLLGDMCGFPLYFSP 99
           HS TT  +   S  GD  G PL+ SP
Sbjct: 164 HSSTTETMHDFSNFGDNMGSPLFQSP 189


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 184 VDTNTCTGDTAD-DXXXXXXXXXXXXXXXXXVAKRSSTPRSARLKRRRIASRSGFSSWT 357
           V TN+  G   D                   +    +TPR  + K+++   R GFS +T
Sbjct: 516 VQTNSLVGRLEDLQEVSPGGAGVNASSDSQSITNNHTTPRPEKQKKKKFTKRLGFSKFT 574


>U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical
           protein F58F9.6 protein.
          Length = 291

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 390 KSMYLRTNCTSGPRAEATSRGNSSSLKTC 304
           K +Y R  C S   A+   +G SSSLK C
Sbjct: 50  KILYTR-KCLSSSLADCDCKGESSSLKLC 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,927,408
Number of Sequences: 27780
Number of extensions: 155991
Number of successful extensions: 450
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)