Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M19
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 151 4e-37
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091... 137 5e-33
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 132 1e-31
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632... 131 4e-31
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 31 0.52
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488... 28 4.8
08_02_0640 - 19636968-19638230 27 6.4
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 27 6.4
12_01_0260 + 1915039-1915141,1915241-1915332,1915430-1915507,191... 27 8.5
10_05_0055 - 8625420-8625737,8625835-8625988,8626202-8626439,862... 27 8.5
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 151 bits (365), Expect = 4e-37
Identities = 71/165 (43%), Positives = 115/165 (69%)
Frame = +3
Query: 6 RVVLDGGFSTQLSCHVGQVIDGDPLWSARFLHTHPDEVVNTHLDFLIAGADLIITNTYQA 185
R+V+DGG +T+L + + DPLWSA+ L + P V HLD+L AGA++IIT +YQA
Sbjct: 29 RLVMDGGLATELEANGADL--NDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITASYQA 86
Query: 186 SVEGFIEHLGLTRKESYELIVRAVELAKRARSLYLEEYQDYVQNDRVPLVVGSVGPYGAH 365
+++GF E G ++++S +L+ ++VE+A+ AR ++L+E+ D + LV S+G YGA+
Sbjct: 87 TIQGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPIQHPI-LVAASIGSYGAY 144
Query: 366 LHDGSEYDGSYADTTSVQTMRDWHRPRIQALVEAGVDMLALETIP 500
L DGSEY G Y + +++ ++D+H+ R++ L EAG D++A ETIP
Sbjct: 145 LADGSEYSGDYGEAGTLEFLKDFHKRRLEVLAEAGPDLIAFETIP 189
>10_08_0045 +
14407892-14408068,14408759-14408815,14408899-14409125,
14409271-14409400,14409848-14410051,14410127-14410198,
14410468-14410608
Length = 335
Score = 137 bits (331), Expect = 5e-33
Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 8/171 (4%)
Frame = +3
Query: 12 VLDGGFSTQLSCHVGQVIDGDPLWSARFLHTHPDEVVNTHLDFLIAGADLIITNTYQASV 191
V+DGG +T+L + + D LWSAR L T PD + HLD+L AGA ++IT +YQA++
Sbjct: 24 VIDGGLATELEANGADLKDA--LWSARCLFTCPDLIRKVHLDYLEAGASVLITGSYQATI 81
Query: 192 EGFIEHLGLTRKESYELIVRAVELAKRARSLYLE-------EYQDYVQNDRVP-LVVGSV 347
+GF+ G +++ES + R+VELA AR++YLE E +D + + P L+ SV
Sbjct: 82 QGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPILIAASV 140
Query: 348 GPYGAHLHDGSEYDGSYADTTSVQTMRDWHRPRIQALVEAGVDMLALETIP 500
G YGA+L DGSEY G Y + +++ ++++H R+Q L EAG D++ ETIP
Sbjct: 141 GSYGAYLADGSEYSGDYGNEGTLEFLKNFHLRRLQVLAEAGPDVIVFETIP 191
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 132 bits (320), Expect = 1e-31
Identities = 70/169 (41%), Positives = 109/169 (64%), Gaps = 6/169 (3%)
Frame = +3
Query: 12 VLDGGFSTQLSCHVGQVIDGDPLWSARFLHTHPDEVVNTHLDFLIAGADLIITNTYQASV 191
V+DGG +T+L H + D LWSA L + P + HLD+L AGA++I + +YQA++
Sbjct: 26 VVDGGLATELEAHGADL--HDELWSASCLVSAPHLIRKVHLDYLDAGANIITSASYQATI 83
Query: 192 EGFIEHLGLTRKESYELIVRAVELAKRARSLYLE-----EYQDYVQNDRVP-LVVGSVGP 353
+GF + GL+R+ S L+ R+V +A+ AR+++ E Y ++ + R P LV S+G
Sbjct: 84 QGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLVAASIGS 142
Query: 354 YGAHLHDGSEYDGSYADTTSVQTMRDWHRPRIQALVEAGVDMLALETIP 500
YGA+L DGSEY G Y + + +T++ +HR R+Q L +AG D++A ETIP
Sbjct: 143 YGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIP 191
>03_02_0194 +
6322499-6322654,6323540-6323596,6323702-6323907,
6324028-6324157,6324285-6324488,6324599-6324670,
6324844-6325008
Length = 329
Score = 131 bits (316), Expect = 4e-31
Identities = 71/165 (43%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Frame = +3
Query: 12 VLDGGFSTQLSCHVGQVIDGDPLWSARFLHTHPDEVVNTHLDFLIAGADLIITNTYQASV 191
V+DGGF+TQL +G I+ DPLWSA L T P + H+ +L AGAD+II+++YQA++
Sbjct: 17 VIDGGFATQLEA-LGADIN-DPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATI 74
Query: 192 EGFIEHLGLTRKESYELIVRAVELAKRARSLYLEEY--QDYVQNDRVPLVVGSVGPYGAH 365
GF+ G+ +E+ L+ R++ELA AR + + + +R LV S+G YGA+
Sbjct: 75 PGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRA-LVAASIGSYGAY 132
Query: 366 LHDGSEYDGSYADTTSVQTMRDWHRPRIQALVEAGVDMLALETIP 500
L DGSEY GSY + + + ++D+HR R+Q L AG D++A E IP
Sbjct: 133 LADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIP 177
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 31.1 bits (67), Expect = 0.52
Identities = 26/88 (29%), Positives = 40/88 (45%)
Frame = +3
Query: 90 RFLHTHPDEVVNTHLDFLIAGADLIITNTYQASVEGFIEHLGLTRKESYELIVRAVELAK 269
R LHT + THL+F IAG L TY+ +H+G+ + E++ A L
Sbjct: 320 RELHTPASDRSCTHLEFDIAGTGL----TYETG-----DHVGVYTENCLEVVEEAERLLG 370
Query: 270 RARSLYLEEYQDYVQNDRVPLVVGSVGP 353
+ + + D + D PL GS+ P
Sbjct: 371 YSPEAFFTIHAD--KEDGTPLGGGSLAP 396
>12_01_1054 +
10847342-10847543,10847627-10847962,10848557-10848807,
10849226-10849313,10849548-10849723,10850597-10850656,
10850811-10850901,10851563-10851639,10852565-10852653,
10852950-10853061,10853623-10853725,10854892-10855121
Length = 604
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 285 YLEEYQDYVQNDRVPLVVGSVGPYGAHLHDGSEYDGSYADTTSVQTMRDWHR 440
Y E + + + L+ GS Y +LHDG + +G S+QT+ W+R
Sbjct: 394 YGEIEEKQISGGIISLIDGSY-EYYHYLHDGIDDNGWGCAYRSLQTIMSWYR 444
>08_02_0640 - 19636968-19638230
Length = 420
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 51 VGQVIDGDPLWSARFLHTHPDEVVNT 128
+GQVI GDP WS+ L T D+ T
Sbjct: 259 IGQVIKGDPTWSS-VLITDDDDTSTT 283
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +3
Query: 18 DGGFSTQLSCHVGQVIDGD--PLWSAR---FLHTHPDEVVN 125
DGGFS H G+ ++ D PLWS + + PD++ N
Sbjct: 635 DGGFSFPPPLHSGKNVESDVKPLWSKKVDMYTINDPDDLQN 675
>12_01_0260 +
1915039-1915141,1915241-1915332,1915430-1915507,
1915623-1915697
Length = 115
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 96 LHTHPDEVVNTHLDFLIAGADLIITNTYQASVEGFIEHLGLTRKESY 236
LH H D ++T D G +LIIT+ + G+ + L ++ SY
Sbjct: 50 LHDHEDSPISTQSDQQEVGVNLIITDYCMPGMTGY-DLLKKIKESSY 95
>10_05_0055 -
8625420-8625737,8625835-8625988,8626202-8626439,
8626610-8626820,8626909-8627033,8627451-8627570,
8627749-8628625
Length = 680
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 374 WFRVRWQLCGYYFSSDNARLASSSNPGASRS 466
W +R++ +Y RLA+S +PG+S S
Sbjct: 249 WCNLRYETFLFYDGDPTVRLAASPSPGSSSS 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,256,180
Number of Sequences: 37544
Number of extensions: 278611
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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