Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M19
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    36   0.022
AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical ...    30   0.82 

>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
           protein R03D7.1 protein.
          Length = 1249

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 30/132 (22%), Positives = 57/132 (43%)
 Frame = +3

Query: 102 THPDEVVNTHLDFLIAGADLIITNTYQASVEGFIEHLGLTRKESYELIVRAVELAKRARS 281
           T PD +   H  +L AGAD + TNT+  +     ++        +E+  ++  +A+RA  
Sbjct: 61  TRPDIIYKIHKLYLEAGADFVETNTFSGTTIAQADYR--CEHLVHEINYQSALVARRACD 118

Query: 282 LYLEEYQDYVQNDRVPLVVGSVGPYGAHLHDGSEYDGSYADTTSVQTMRDWHRPRIQALV 461
                        R   V G++GP    L      +       + Q +   +  + ++L+
Sbjct: 119 ------DVGAATGRRRYVCGAIGPTNRTLSISPSVEKPDFRNVTFQELVKAYGDQARSLI 172

Query: 462 EAGVDMLALETI 497
           + GVD+L +ET+
Sbjct: 173 QGGVDVLLVETV 184


>AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical
           protein T13G4.4 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 339 GSVGPYGAHLHDGSEYDGSYADTTSV-QTMRDWHRPRIQAL-VEAGVDMLALETIP 500
           GSVG      HD SEY G+Y D +   +T  D+ +  +      + +  L  ETIP
Sbjct: 169 GSVGTLATMYHDLSEYTGAYMDQSEAKKTAYDYFKIILTLFHNRSSIRKLIFETIP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,593,987
Number of Sequences: 27780
Number of extensions: 225154
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)