Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M17
         (509 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    26   0.17 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    26   0.17 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    26   0.17 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   1.6  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 DIDKMFTRFRYRSVFVQQHEAGQTRTG 193
           DID + T++RY  V + Q   G ++ G
Sbjct: 137 DIDSLITKWRYNHVLMVQRMIGSSQLG 163


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 DIDKMFTRFRYRSVFVQQHEAGQTRTG 193
           DID + T++RY  V + Q   G ++ G
Sbjct: 297 DIDSLITKWRYNHVLMVQRMIGSSQLG 323


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 DIDKMFTRFRYRSVFVQQHEAGQTRTG 193
           DID + T++RY  V + Q   G ++ G
Sbjct: 297 DIDSLITKWRYNHVLMVQRMIGSSQLG 323


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 53  LEHGLTPSSDTLVSAPPPQTDIDKMFTRFRYRSV 154
           + H L  ++  LVS PP + +      ++ YRS+
Sbjct: 253 IAHALCLTNKNLVSKPPHEVEKRAQDGQYEYRSL 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,978
Number of Sequences: 336
Number of extensions: 2073
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)