Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M17
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 2.9
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 3.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 5.0
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 5.0
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 25 5.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.6
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 6.6
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 6.6
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 8.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.7
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 340 SISPPLYSSRIYHNSNSQTQLGRVIVVTH 426
SISP Y + + HN ++Q+ G V V +H
Sbjct: 251 SISPSAYDAPLLHNVDTQSIDGFVSVASH 279
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 3.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +3
Query: 141 GIDPFSFNNTKPDRPEPAVPLIR 209
G+DP+ + P+ P+P +P ++
Sbjct: 225 GLDPYDLDAKAPELPKPLIPAMK 247
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 302 ADRSTAENTTQTTRSHHHFTPV-ESITTPT 388
+D S + NT TT++ FTP + TTPT
Sbjct: 923 SDGSLSPNTVTTTKATTTFTPTPTTTTTPT 952
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 80 DTLVSAPPPQTDIDKMFTRFRYRSVF 157
DTLVS P DID + R R ++
Sbjct: 637 DTLVSLENPMRDIDSLIQRLRSFDIY 662
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 241 FSSMLIEPALSLMRGTAGSGLSGFVLLNENGSIPKPXEHLVYVRLG 104
FSS + AL+L T G L G L G + K H+V V +G
Sbjct: 83 FSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVG 128
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 14 EQLNSIQNESSRVLEHGLTPSSDTL 88
E L +++ SS LE L P+SDT+
Sbjct: 1900 ENLQFVKDPSSLALETNLLPASDTI 1924
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 174 PDRPEPAVPLIRESAGSMSIEEKQRIAKQQET 269
P +P P PL GS IEE +R+ Q+T
Sbjct: 247 PAKP-PKHPLASAPNGSFDIEEYKRVYSNQDT 277
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 248 DSETARDSS*ILPPTTGAADRSTAENTTQTTRSHHHF 358
DSE + SS + PP+TG+++ + ++ + + F
Sbjct: 12 DSEAVKKSSNLRPPSTGSSNSNGSDTASPKKKKKGFF 48
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 256 FAIRCFSSMLIEPALSLMRGTAGSGLSGFVLLNE-NGS 146
F + FSS L++PA S G + S L + NE NGS
Sbjct: 448 FRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELNGS 485
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 281 LPPTTGAADRSTAENTTQTTRSHHHFTPVESITTPTLKHN 400
LPP +G + ++ + ++ H TP + TPT++ N
Sbjct: 645 LPPPSGQVNAPMSQTPNPISFAYQHGTP---LATPTMRAN 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,846
Number of Sequences: 5004
Number of extensions: 35735
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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