Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M17
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381     29   2.9  
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322...    28   3.8  
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    28   5.0  
06_03_1447 + 30233090-30233776                                         27   6.6  
06_03_1436 + 30148325-30149011                                         27   6.6  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    27   8.8  
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    27   8.8  

>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
          Length = 383

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 289 WWENLRTVSCCFAIRCFSSMLIEPALSLMRGTAGSGLSGFVL-LNENGSIPKP 134
           WW +    SC F I    +  I PA     GT     +GF L   ++  +P P
Sbjct: 23  WWSSSMAASCSFTISNHCAQTIWPATLAGAGTPQLATTGFRLDPGQSVQVPAP 75


>04_03_1003 -
           21631188-21631274,21631939-21632043,21632171-21632248,
           21632337-21632411,21632908-21632994,21633091-21633158,
           21633478-21633565,21633684-21633784,21633831-21633990,
           21635088-21635246,21635351-21635527
          Length = 394

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 284 PPTTGAADRSTAENTTQ 334
           PPTTGAAD  TA +T Q
Sbjct: 373 PPTTGAADLQTAAHTPQ 389


>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 174 PDRPEPAVPLIRESAG-SMSIEEKQRIA 254
           P  P  A+PL R++AG S+ +E+K  IA
Sbjct: 218 PSSPLDAIPLCRQTAGSSLDVEDKVTIA 245


>06_03_1447 + 30233090-30233776
          Length = 228

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 99  GADTRVSDDGVRPCSNTLLDSFCIE 25
           G D   +DD  + CS T+LD F +E
Sbjct: 74  GGDGGAADDSEQSCSYTVLDDFVLE 98


>06_03_1436 + 30148325-30149011
          Length = 228

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 99  GADTRVSDDGVRPCSNTLLDSFCIE 25
           G D   +DD  + CS T+LD F +E
Sbjct: 74  GGDGGAADDSEQSCSYTVLDDFVLE 98


>07_01_0242 +
           1775704-1776797,1776839-1777759,1778312-1778412,
           1778770-1778900,1779530-1779788,1779823-1780098,
           1780100-1781352
          Length = 1344

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 238 SSMLIEPALSLM-RGTAGSGLSGFVLLNENGSIPKP 134
           S M+  P+ S++  GT  SGLSG  L+N    I KP
Sbjct: 648 SYMMSYPSSSMVSHGTFMSGLSGGSLMNVQAEIQKP 683


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 427 QGQTIQGSLTIRIHRHSLPRTWV 495
           QG+   G  + R H  SLP  WV
Sbjct: 555 QGRDTAGDTSFRFHNFSLPNNWV 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,041
Number of Sequences: 37544
Number of extensions: 270982
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)