Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M17
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical p...    29   2.6  
U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z82258-2|CAL63988.1|  128|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U50193-4|AAP68917.1|  492|Caenorhabditis elegans Nuclear pore co...    27   6.0  
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    27   6.0  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 287 PTTGAADRSTAENTTQTTRSHHHFTPVESITTPT 388
           PTT   + +T   TT TT +    TP  + TTPT
Sbjct: 143 PTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPT 176



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 290 TTGAADRSTAENTTQTTRSHHHFTPVESITTPT 388
           TT     ST   TT TT +    TP  + TTPT
Sbjct: 64  TTSTTTTSTTTTTTPTTPTTTTTTPTTTTTTPT 96


>U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical
           protein C45G9.4 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 65  LTPSSDTLVSAPPPQTDIDKMFTRFRYRSVFVQQHEAGQTRTGCASHQRECR 220
           +TP    LVS  P +T  DK  T+ R  S   ++ ++ +   GC + +R+ +
Sbjct: 5   ITPDKKKLVSPKPTKTTSDKSKTKPRRSSKTSKKRKSKKGLFGCCAKKRKTK 56


>U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical
           protein C45G9.9 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 65  LTPSSDTLVSAPPPQTDIDKMFTRFRYRSVFVQQHEAGQTRTGCASHQRECR 220
           +TP    LVS  P +T  DK  T+ R  S   ++ ++ +   GC + +R+ +
Sbjct: 5   ITPDKKKLVSPKPTKTTSDKSKTKPRRSSKTSKKRKSKKGLFGCCAKKRKTK 56


>Z82258-2|CAL63988.1|  128|Caenorhabditis elegans Hypothetical
           protein C27H2.5 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 358 YSSRIYHNSNSQTQLGRVIVVTHQGQTIQG 447
           ++ RI +N+   + +GRV+   H G T+ G
Sbjct: 52  WNDRILYNNMGASTVGRVVGAGHNGHTVHG 81


>U50193-4|AAP68917.1|  492|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform a protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 197 ASHQRECR-LYEHRGEAADSETARDSS*ILPPTTGA-ADRSTAENTTQTTRSHHHFTPVE 370
           AS QR+ R L   +G  + S  A+DSS I+PP +   +D S A   +       ++T  E
Sbjct: 57  ASTQRQLRFLAAKKGALSSSSDAQDSSFIIPPISKVMSDLSPAVTRSADVTKDLNYTSKE 116

Query: 371 S 373
           +
Sbjct: 117 A 117


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform b protein.
          Length = 1189

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 197 ASHQRECR-LYEHRGEAADSETARDSS*ILPPTTGA-ADRSTAENTTQTTRSHHHFTPVE 370
           AS QR+ R L   +G  + S  A+DSS I+PP +   +D S A   +       ++T  E
Sbjct: 57  ASTQRQLRFLAAKKGALSSSSDAQDSSFIIPPISKVMSDLSPAVTRSADVTKDLNYTSKE 116

Query: 371 S 373
           +
Sbjct: 117 A 117


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 343 ISPPLYSSR-IYHNSNSQTQLGRVIVVTHQGQTIQGSLTIRIHR 471
           ISPP+YSS   +HN ++  QL    V+      I  ++ +++ R
Sbjct: 250 ISPPMYSSTPHHHNHHNHQQLQHHQVIKSPQPPITKTIEVKVER 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,205,661
Number of Sequences: 27780
Number of extensions: 213411
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)