Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M17
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.8  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 183 PEPAVPLIRESAGSMSIEEKQRIAKQQETVRK 278
           PE  +P+ R   GS  I E++ I      + K
Sbjct: 157 PEDVIPIRRTGEGSKPIFEREEIKNVLTKINK 188


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = +2

Query: 158 VQQHEAGQTRTGCASHQRECRLYEHRGEAADSETARDSS*ILPPTTGAADRSTAENTTQT 337
           V+QH +    T C+ H   C     R ++ +S+         P  + +   ++   +T++
Sbjct: 280 VKQHRSSSASTTCSGHTVRCFTGGPR-KSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKS 338

Query: 338 TRSHHHFTPVESIT 379
           T   +H     S+T
Sbjct: 339 TIVRNHLNSTCSVT 352


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 119 LCPSGGEAPIRGYLMMELGRVP 54
           +CP GG A I  +    LG  P
Sbjct: 611 ICPDGGRAEINEWERCNLGLEP 632


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 119 LCPSGGEAPIRGYLMMELGRVP 54
           +CP GG A I  +    LG  P
Sbjct: 611 ICPDGGRAEINEWERCNLGLEP 632


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 119 LCPSGGEAPIRGYLMMELGRVP 54
           +CP GG A I  +    LG  P
Sbjct: 611 ICPDGGRAEINEWERCNLGLEP 632


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 503 VLITHVLGRLCLCILIVREP 444
           + +T  +G +  CI+I R P
Sbjct: 43  IFVTGFVGNIITCIVIWRNP 62


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 460 RIHRHSLPRTWVIRT 504
           RIH  S  R WV+ T
Sbjct: 132 RIHADSCDRLWVLDT 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,469
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)