Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M15
(485 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8ISR8 Cluster: Polyadenylate binding protein; n=7; Coe... 135 4e-31
UniRef50_UPI0000D578C8 Cluster: PREDICTED: similar to poly A bin... 78 9e-14
UniRef50_Q5T3B0 Cluster: Poly(A) binding protein, cytoplasmic 4;... 75 6e-13
UniRef50_Q13310 Cluster: Polyadenylate-binding protein 4 (Poly(A... 75 6e-13
UniRef50_P21187 Cluster: Polyadenylate-binding protein (Poly(A)-... 72 6e-12
UniRef50_UPI000065E5EA Cluster: Polyadenylate-binding protein 1-... 64 2e-09
UniRef50_A7SSV8 Cluster: Predicted protein; n=1; Nematostella ve... 64 2e-09
UniRef50_Q4VXT5 Cluster: Chromosome 20 open reading frame 119; n... 54 2e-06
UniRef50_Q4SJ33 Cluster: Chromosome 21 SCAF14577, whole genome s... 49 5e-05
UniRef50_Q4UID9 Cluster: Polyadenylate (Poly(A)) binding protein... 44 0.001
UniRef50_Q2GSX8 Cluster: Polyadenylate-binding protein, cytoplas... 44 0.002
UniRef50_Q10N87 Cluster: Polyadenylate binding protein, types 1,... 44 0.002
UniRef50_UPI000069E108 Cluster: UPI000069E108 related cluster; n... 43 0.003
UniRef50_A7ARL3 Cluster: Polyadenylate binding protein, putative... 43 0.003
UniRef50_Q5CLX5 Cluster: Poly(A)-binding protein fabm; n=3; Cryp... 42 0.007
UniRef50_Q7K797 Cluster: Putative uncharacterized protein pab-1;... 42 0.010
UniRef50_A6RJZ8 Cluster: Putative uncharacterized protein; n=2; ... 41 0.013
UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5 (Poly(A... 41 0.013
UniRef50_A1EAA0 Cluster: Polyadenylate-binding protein; n=3; Pla... 41 0.017
UniRef50_Q5KBW2 Cluster: Polyadenylate-binding protein, cytoplas... 40 0.030
UniRef50_A7NTZ5 Cluster: Chromosome chr18 scaffold_1, whole geno... 40 0.039
UniRef50_A3AVD4 Cluster: Putative uncharacterized protein; n=3; ... 40 0.039
UniRef50_Q7RDM4 Cluster: PolyA binding protein-related; n=5; Pla... 40 0.039
UniRef50_Q1DXH0 Cluster: Polyadenylate-binding protein, cytoplas... 39 0.069
UniRef50_Q4FW55 Cluster: Poly(A) binding protein, putative; n=6;... 37 0.28
UniRef50_A4S0L2 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 36 0.37
UniRef50_UPI0000D577C9 Cluster: PREDICTED: similar to poly(A) bi... 36 0.49
UniRef50_Q5YBC0 Cluster: Polyadenylate binding protein; n=1; Hel... 36 0.49
UniRef50_UPI00004D7430 Cluster: Serologically defined colon canc... 34 1.5
UniRef50_Q9XUS0 Cluster: Putative uncharacterized protein; n=2; ... 34 1.5
UniRef50_Q5DA36 Cluster: SJCHGC06322 protein; n=3; Bilateria|Rep... 34 1.5
UniRef50_UPI000069F796 Cluster: Mucin-5B precursor (Mucin 5 subt... 34 2.0
UniRef50_Q9ZQA8 Cluster: Probable polyadenylate-binding protein ... 34 2.0
UniRef50_Q54BM2 Cluster: RNA-binding region-containing protein; ... 33 2.6
UniRef50_O94847 Cluster: KIAA0746 protein; n=29; Amniota|Rep: KI... 33 2.6
UniRef50_Q23MM3 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_UPI0000D56085 Cluster: PREDICTED: similar to CG9484-PA;... 33 4.5
UniRef50_A2YEJ3 Cluster: Putative uncharacterized protein; n=1; ... 32 6.0
UniRef50_Q7PWH7 Cluster: ENSANGP00000019422; n=7; Culicidae|Rep:... 32 6.0
UniRef50_UPI0000E2189C Cluster: PREDICTED: similar to phogrin; n... 32 7.9
UniRef50_Q0F3C0 Cluster: UvrD/REP helicase family protein; n=1; ... 32 7.9
UniRef50_A7RV65 Cluster: Predicted protein; n=1; Nematostella ve... 32 7.9
>UniRef50_Q8ISR8 Cluster: Polyadenylate binding protein; n=7;
Coelomata|Rep: Polyadenylate binding protein -
Spodoptera frugiperda (Fall armyworm)
Length = 86
Score = 135 bits (327), Expect = 4e-31
Identities = 67/83 (80%), Positives = 68/83 (81%)
Frame = +2
Query: 155 GVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQEQ 334
GVA TA SIRAPLVTQS RPAGYKYTANMRNPPAPQPAVHIQGQE QEQ
Sbjct: 1 GVA-TAASIRAPLVTQSGRPAGYKYTANMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQ 59
Query: 335 KQMLGERLFPVIQRMHPDLAGKI 403
KQMLGERLFP+IQRMHPDLAGKI
Sbjct: 60 KQMLGERLFPLIQRMHPDLAGKI 82
>UniRef50_UPI0000D578C8 Cluster: PREDICTED: similar to poly A
binding protein, cytoplasmic 1 isoform 2; n=2;
Coelomata|Rep: PREDICTED: similar to poly A binding
protein, cytoplasmic 1 isoform 2 - Tribolium castaneum
Length = 558
Score = 78.2 bits (184), Expect = 9e-14
Identities = 58/134 (43%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Frame = +2
Query: 11 AQPPVRPSTQTPASAYANMQXXXXXXXXXXXXXXXXTSL--GARPITGQQGVAGTAGSIR 184
AQ PVRP Q A+ Y + S RPITGQQ G
Sbjct: 387 AQTPVRPGAQGSANPYGTIPTTYRAAPRPPNQSAALRSNINVPRPITGQQP-PNIQGR-- 443
Query: 185 APLVTQSS-RPAGYKYTANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLF 361
PL +Q+ PAG + N Q AVHIQGQE QEQKQMLGERLF
Sbjct: 444 -PLASQAVVAPAGL----GISNAAPVQQAVHIQGQEPLTATMLAAAPPQEQKQMLGERLF 498
Query: 362 PVIQRMHPDLAGKI 403
P+IQRM+PDLAGKI
Sbjct: 499 PLIQRMYPDLAGKI 512
Score = 54.4 bits (125), Expect = 1e-06
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLEH ESLKAKV+
Sbjct: 513 TGMLLEIDNSELLHMLEHNESLKAKVE 539
>UniRef50_Q5T3B0 Cluster: Poly(A) binding protein, cytoplasmic 4;
n=6; Euarchontoglires|Rep: Poly(A) binding protein,
cytoplasmic 4 - Homo sapiens (Human)
Length = 194
Score = 75.4 bits (177), Expect = 6e-13
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 63 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 122
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 123 QMLGERLFPLIQTMHSNLAGKI 144
Score = 49.2 bits (112), Expect = 5e-05
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 145 TGMLLEIDNSELLHMLESPESLRSKVD 171
>UniRef50_Q13310 Cluster: Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein); n=244; Eukaryota|Rep:
Polyadenylate-binding protein 4 (Poly(A)-binding protein
4) (PABP 4) (Inducible poly(A)-binding protein) - Homo
sapiens (Human)
Length = 644
Score = 75.4 bits (177), Expect = 6e-13
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKI 590
Score = 49.2 bits (112), Expect = 5e-05
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 591 TGMLLEIDNSELLHMLESPESLRSKVD 617
>UniRef50_P21187 Cluster: Polyadenylate-binding protein
(Poly(A)-binding protein); n=6; Bilateria|Rep:
Polyadenylate-binding protein (Poly(A)-binding protein)
- Drosophila melanogaster (Fruit fly)
Length = 634
Score = 72.1 bits (169), Expect = 6e-12
Identities = 46/101 (45%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Frame = +2
Query: 128 GARPITGQQGVAGTAGSIRAPLVTQSS-RPAGYKYTANMRNPPAPQ-----PAVH-IQGQ 286
GAR ITGQQ A A + + R + YKYT+NMRNPP PQ P +QG+
Sbjct: 491 GARAITGQQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGK 550
Query: 287 --EXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
E QEQKQ+LGERL+P+I+ MH +LAGKI
Sbjct: 551 NSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKI 591
Score = 46.4 bits (105), Expect = 3e-04
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEI+NSELLHM+E E+LKAKV+
Sbjct: 592 TGMLLEIENSELLHMIEDQEALKAKVE 618
>UniRef50_UPI000065E5EA Cluster: Polyadenylate-binding protein
1-like.; n=3; Euteleostomi|Rep: Polyadenylate-binding
protein 1-like. - Takifugu rubripes
Length = 648
Score = 63.7 bits (148), Expect = 2e-09
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = +2
Query: 143 TGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNP---PAP--QPAVHIQGQEXXXXXX 307
T G G P V +S + YKY++ +RN P P +P+V+IQGQE
Sbjct: 534 TNNIGTQTVGGRAELPGVPRSGQ---YKYSSAVRNAQQVPGPVLEPSVYIQGQEPLTASM 590
Query: 308 XXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+QKQ+LGERL+P+I +HP+LAGKI
Sbjct: 591 LAAAPLMDQKQLLGERLYPLISTLHPNLAGKI 622
Score = 45.2 bits (102), Expect = 8e-04
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLEIDNSELLHMLE ESL +KV
Sbjct: 623 TGMLLEIDNSELLHMLETPESLHSKV 648
>UniRef50_A7SSV8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 584
Score = 63.7 bits (148), Expect = 2e-09
Identities = 45/106 (42%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Frame = +2
Query: 128 GARPITGQQGV--AGTAGSIRAPLVTQSSRPAG-------YKYTANMRNPPA----PQPA 268
G + + GQ G+ G AG R P+ Q +R G YK++ +RNPP P+
Sbjct: 429 GVQNMGGQAGMPQGGPAGMPRMPV--QQARMGGVPPQRQPYKFSQTVRNPPPAGQMPEGG 486
Query: 269 VHIQG-QEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
I G QE QEQKQMLGERLFP+IQ HPD+AGKI
Sbjct: 487 QGIPGGQEPLNPSVLAAATPQEQKQMLGERLFPLIQTNHPDMAGKI 532
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDN+ELLHMLE ++L+ KVD
Sbjct: 533 TGMLLEIDNAELLHMLESRDALQMKVD 559
>UniRef50_Q4VXT5 Cluster: Chromosome 20 open reading frame 119; n=6;
Homo sapiens|Rep: Chromosome 20 open reading frame 119 -
Homo sapiens (Human)
Length = 171
Score = 53.6 bits (123), Expect = 2e-06
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 121
Score = 40.7 bits (91), Expect = 0.017
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAK 477
TGMLLEIDNSELL MLE ESL AK
Sbjct: 122 TGMLLEIDNSELLLMLESPESLHAK 146
>UniRef50_Q4SJ33 Cluster: Chromosome 21 SCAF14577, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 21
SCAF14577, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 380
Score = 49.2 bits (112), Expect = 5e-05
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 326 TGMLLEIDNSELLHMLESPESLRSKVD 352
Score = 47.6 bits (108), Expect = 1e-04
Identities = 24/41 (58%), Positives = 25/41 (60%)
Frame = +2
Query: 281 GQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
GQE EQKQMLGERLFP+IQ MH LAGKI
Sbjct: 285 GQEPLTTSMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKI 325
>UniRef50_Q4UID9 Cluster: Polyadenylate (Poly(A)) binding protein,
putative; n=2; Theileria|Rep: Polyadenylate (Poly(A))
binding protein, putative - Theileria annulata
Length = 664
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 332 QKQMLGERLFPVIQRMHPDLAGKI 403
QKQM+GERLFP+I R +PDLAGKI
Sbjct: 604 QKQMIGERLFPIIARDNPDLAGKI 627
Score = 41.9 bits (94), Expect = 0.007
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGM+LEIDN ELL +LE + LKAK+D
Sbjct: 628 TGMMLEIDNHELLQLLEDNDQLKAKID 654
>UniRef50_Q2GSX8 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=6;
Pezizomycotina|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Chaetomium globosum (Soil fungus)
Length = 783
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +2
Query: 326 QEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQ+LGE LFP IQ + PDLAGKI
Sbjct: 690 QQQKQILGENLFPKIQALQPDLAGKI 715
Score = 35.5 bits (78), Expect = 0.64
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+DN+EL+++LE +L AKV+
Sbjct: 716 TGMLLEMDNAELVNLLEDEAALVAKVN 742
>UniRef50_Q10N87 Cluster: Polyadenylate binding protein, types 1, 2,
3, 4 family protein, expressed; n=4; Magnoliophyta|Rep:
Polyadenylate binding protein, types 1, 2, 3, 4 family
protein, expressed - Oryza sativa subsp. japonica (Rice)
Length = 647
Score = 43.6 bits (98), Expect = 0.002
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 326 QEQKQMLGERLFPVIQRMHPDLAGKI 403
+EQK MLG RL+P+++R HPDLA KI
Sbjct: 562 EEQKNMLGNRLYPLVERHHPDLASKI 587
>UniRef50_UPI000069E108 Cluster: UPI000069E108 related cluster; n=1;
Xenopus tropicalis|Rep: UPI000069E108 UniRef100 entry -
Xenopus tropicalis
Length = 405
Score = 43.2 bits (97), Expect = 0.003
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = +2
Query: 263 PAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
PA+ +QGQE EQKQMLG RLFP++Q + LA KI
Sbjct: 304 PAICVQGQEPLTISLLVSASPHEQKQMLGVRLFPLVQIIDKKLAEKI 350
>UniRef50_A7ARL3 Cluster: Polyadenylate binding protein, putative;
n=1; Babesia bovis|Rep: Polyadenylate binding protein,
putative - Babesia bovis
Length = 585
Score = 43.2 bits (97), Expect = 0.003
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 215 AGYKYTANMRNP---PAPQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHP 385
+G+K+TA RN P PA + Q KQM+GERLFP++ R +P
Sbjct: 490 SGFKFTAQARNRTELPNGAPAAAVPTQRPIDGAAM-------HKQMIGERLFPIVARENP 542
Query: 386 DLAGKI 403
+LAGKI
Sbjct: 543 ELAGKI 548
Score = 34.7 bits (76), Expect = 1.1
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGM+LE+DN EL+ +LE+ + LK K+
Sbjct: 549 TGMMLEMDNQELMALLENEQQLKDKI 574
>UniRef50_Q5CLX5 Cluster: Poly(A)-binding protein fabm; n=3;
Cryptosporidium|Rep: Poly(A)-binding protein fabm -
Cryptosporidium hominis
Length = 746
Score = 41.9 bits (94), Expect = 0.007
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2
Query: 233 ANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
A ++NP PQP V + QKQ+LGERLFP+I + P+LAGKI
Sbjct: 654 ALVQNPLIPQPDVPLTAATLAAASPSM------QKQLLGERLFPIIAQFQPELAGKI 704
Score = 34.3 bits (75), Expect = 1.5
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGM+LE+DN+ELL +L +K KVD
Sbjct: 705 TGMMLEMDNNELLELLSSDIEIKNKVD 731
>UniRef50_Q7K797 Cluster: Putative uncharacterized protein pab-1;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein pab-1 - Caenorhabditis elegans
Length = 586
Score = 41.5 bits (93), Expect = 0.010
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 352 KAFPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKVD 483
K +P H K+A + TGM+LEIDNSEL+ ML+ E ++KVD
Sbjct: 536 KLYPGH-KDAGKI----TGMMLEIDNSELIMMLQDSELFRSKVD 574
Score = 38.3 bits (85), Expect = 0.091
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 182 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 340
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 469 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 524
Query: 341 MLGERLFPVIQRMHPDL--AGKI 403
+LGER++ +I++++P AGKI
Sbjct: 525 LLGERIYALIEKLYPGHKDAGKI 547
>UniRef50_A6RJZ8 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 790
Score = 41.1 bits (92), Expect = 0.013
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +2
Query: 326 QEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQ+LGE LFP IQ + P+LAGKI
Sbjct: 704 QQQKQILGEALFPKIQVLQPELAGKI 729
Score = 38.3 bits (85), Expect = 0.091
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE++N EL++++E SL+AKVD
Sbjct: 730 TGMLLEMENQELINLIEDDASLRAKVD 756
>UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5
(Poly(A)-binding protein 5); n=47; Viridiplantae|Rep:
Polyadenylate-binding protein 5 (Poly(A)-binding protein
5) - Arabidopsis thaliana (Mouse-ear cress)
Length = 668
Score = 41.1 bits (92), Expect = 0.013
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLE+D +E+LH+LE E+LKAKV
Sbjct: 614 TGMLLEMDQAEILHLLESPEALKAKV 639
>UniRef50_A1EAA0 Cluster: Polyadenylate-binding protein; n=3;
Plasmodium|Rep: Polyadenylate-binding protein -
Plasmodium falciparum
Length = 875
Score = 40.7 bits (91), Expect = 0.017
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGM+LE+DNSELL +LE+ E LK K+D
Sbjct: 839 TGMMLEMDNSELLILLENEEQLKKKID 865
Score = 39.1 bits (87), Expect = 0.052
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +2
Query: 332 QKQMLGERLFPVIQRMHPDLAGKI 403
QKQ+LGE LFP++ HP LAGKI
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKI 838
>UniRef50_Q5KBW2 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=2;
Eukaryota|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 673
Score = 39.9 bits (89), Expect = 0.030
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 329 EQKQMLGERLFPVIQRMHPDLAGKI 403
EQKQMLGE L+P+I P+LAGKI
Sbjct: 584 EQKQMLGEALYPLIHETQPELAGKI 608
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+DN+ELLH++E +L+ KVD
Sbjct: 609 TGMLLEMDNAELLHLVESQPALQEKVD 635
>UniRef50_A7NTZ5 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 244
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLE+D +E+LH+LE E+LK+KV
Sbjct: 186 TGMLLEMDQTEVLHLLESPEALKSKV 211
>UniRef50_A3AVD4 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 611
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLE+D +E+LH+LE E+LK+KV
Sbjct: 552 TGMLLEMDQTEVLHLLESPEALKSKV 577
>UniRef50_Q7RDM4 Cluster: PolyA binding protein-related; n=5;
Plasmodium (Vinckeia)|Rep: PolyA binding protein-related
- Plasmodium yoelii yoelii
Length = 859
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGM+LE+DNSELL +LE+ + LK K+D
Sbjct: 805 TGMMLEMDNSELLILLENEDQLKKKID 831
Score = 39.1 bits (87), Expect = 0.052
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +2
Query: 332 QKQMLGERLFPVIQRMHPDLAGKI 403
QKQ+LGE LFP++ HP LAGKI
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKI 804
>UniRef50_Q1DXH0 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=11;
Pezizomycotina|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Coccidioides immitis
Length = 768
Score = 38.7 bits (86), Expect = 0.069
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 329 EQKQMLGERLFPVIQRMHPDLAGKI 403
+QKQMLGE ++P IQ P+LAGKI
Sbjct: 677 QQKQMLGEAIYPKIQAQQPELAGKI 701
Score = 38.3 bits (85), Expect = 0.091
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+DN+ELL +++ +LKAKVD
Sbjct: 702 TGMLLEMDNAELLALVDDDAALKAKVD 728
>UniRef50_Q4FW55 Cluster: Poly(A) binding protein, putative; n=6;
Trypanosomatidae|Rep: Poly(A) binding protein, putative
- Leishmania major strain Friedlin
Length = 594
Score = 36.7 bits (81), Expect = 0.28
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Frame = +2
Query: 146 GQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQ--------PAVHIQG--QEXX 295
G G+ G G + +RP + MR+ P PQ P H Q Q
Sbjct: 460 GMGGMGGMGGMGSMGGMGGMARPMAPNAMSQMRSRPMPQKPPMQSLMPQQHQQAPPQGQN 519
Query: 296 XXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
++QK +LGERL+ I R HP +A KI
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKI 555
Score = 33.5 bits (73), Expect = 2.6
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLE+DN+E+L+ML+ L +K+
Sbjct: 556 TGMLLEMDNAEILNMLDSPTMLDSKI 581
>UniRef50_A4S0L2 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 572
Score = 36.3 bits (80), Expect = 0.37
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLE+D SE+LH++E ++L +KV
Sbjct: 532 TGMLLEMDQSEVLHLIESPDALTSKV 557
>UniRef50_UPI0000D577C9 Cluster: PREDICTED: similar to poly(A)
binding protein, cytoplasmic 1; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to poly(A) binding
protein, cytoplasmic 1 - Tribolium castaneum
Length = 565
Score = 35.9 bits (79), Expect = 0.49
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = +2
Query: 329 EQKQMLGERLFPVIQRMHPDLAGKI 403
+ K+MLGER++ VI++ +P++AGKI
Sbjct: 497 DDKRMLGERMYRVIEKTYPEIAGKI 521
Score = 33.5 bits (73), Expect = 2.6
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEID SEL ++ + SLKAKV+
Sbjct: 522 TGMLLEIDISELKALVNNEGSLKAKVE 548
>UniRef50_Q5YBC0 Cluster: Polyadenylate binding protein; n=1;
Helicosporidium sp. ex Simulium jonesii|Rep:
Polyadenylate binding protein - Helicosporidium sp.
subsp. Simulium jonesii (Green alga)
Length = 107
Score = 35.9 bits (79), Expect = 0.49
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 326 QEQKQMLGERLFPVIQRMHPDLAGKI 403
++QKQ+LGE+LFP + + P+LA KI
Sbjct: 24 EQQKQLLGEQLFPKVAQHQPELAAKI 49
Score = 34.3 bits (75), Expect = 1.5
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 358 FPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKV 480
FP +++ TGMLLE+DNSEL+ ++E E+L KV
Sbjct: 35 FPKVAQHQPELAAKITGMLLEMDNSELVLLIETPEALADKV 75
>UniRef50_UPI00004D7430 Cluster: Serologically defined colon cancer
antigen 8 (Centrosomal colon cancer autoantigen protein)
(hCCCAP) (Antigen NY-CO-8).; n=3; Xenopus
tropicalis|Rep: Serologically defined colon cancer
antigen 8 (Centrosomal colon cancer autoantigen protein)
(hCCCAP) (Antigen NY-CO-8). - Xenopus tropicalis
Length = 626
Score = 34.3 bits (75), Expect = 1.5
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Frame = +3
Query: 129 EQDQSQDNKVLLARLDQSVH-LLLLKAAVQLVINTLQI-CEILQLRSLQFTYRARNH*RL 302
EQ+ Q + + A+ DQ V+ ++LL A+ +I+ L+ C +L + T R R+ ++
Sbjct: 477 EQELKQKMQQMEAQHDQMVNEMVLLMASQNTLISRLKKECNVLAKQLEHVTERNRSDVQV 536
Query: 303 LC*LQPHFKNRSKCLVKGFSQSFKECIQ 386
+C H NR + L+K + +CIQ
Sbjct: 537 ICHENVHAHNRIEELLKREDELEAQCIQ 564
>UniRef50_Q9XUS0 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 294
Score = 34.3 bits (75), Expect = 1.5
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 CPTTCKTKHSNTCI--GLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHGWINP 183
C TC SN C G + +PSS+++ C S + T + C + +
Sbjct: 145 CTNTCSNSCSNACSNGGNQPIVIVIPSSSRNCQNSCQNQCSSACTTMTCRQTCQNTCLGS 204
Query: 184 CTSC 195
C SC
Sbjct: 205 CNSC 208
>UniRef50_Q5DA36 Cluster: SJCHGC06322 protein; n=3; Bilateria|Rep:
SJCHGC06322 protein - Schistosoma japonicum (Blood
fluke)
Length = 721
Score = 34.3 bits (75), Expect = 1.5
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 329 EQKQMLGERLFPVIQRMHPDLAGKI 403
+QK+ LGE LFP IQ M+P LA K+
Sbjct: 630 DQKRALGEHLFPRIQTMYPTLARKL 654
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLL +DN+E++++LE + L+AK +
Sbjct: 655 TGMLLGVDNAEVINLLESDDLLRAKCE 681
>UniRef50_UPI000069F796 Cluster: Mucin-5B precursor (Mucin 5 subtype
B, tracheobronchial) (High molecular weight salivary
mucin MG1) (Sublingual gland mucin).; n=4; Xenopus
tropicalis|Rep: Mucin-5B precursor (Mucin 5 subtype B,
tracheobronchial) (High molecular weight salivary mucin
MG1) (Sublingual gland mucin). - Xenopus tropicalis
Length = 1119
Score = 33.9 bits (74), Expect = 2.0
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 19 TCKTKHSNTCIGLRKYA--TTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHGWIN 180
T T H+ T +K +T+ +ST S + T S+S T+H T RC W W N
Sbjct: 138 TSATSHTTTTHTTKKSTQLSTVHTSTTSISPTASTLTSKS-TSHTTKRCYWSPWFN 192
>UniRef50_Q9ZQA8 Cluster: Probable polyadenylate-binding protein
At2g36660 (Poly(A)-binding protein At2g36660); n=1;
Arabidopsis thaliana|Rep: Probable polyadenylate-binding
protein At2g36660 (Poly(A)-binding protein At2g36660) -
Arabidopsis thaliana (Mouse-ear cress)
Length = 609
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+D SELL +L+ E L +VD
Sbjct: 549 TGMLLEMDKSELLLLLKSPEDLAVRVD 575
>UniRef50_Q54BM2 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 565
Score = 33.5 bits (73), Expect = 2.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 329 EQKQMLGERLFPVIQRMHPDLAGKI 403
+Q LGE L+P+I PDLAGKI
Sbjct: 504 QQNVALGEHLYPLIHNSQPDLAGKI 528
>UniRef50_O94847 Cluster: KIAA0746 protein; n=29; Amniota|Rep:
KIAA0746 protein - Homo sapiens (Human)
Length = 1029
Score = 33.5 bits (73), Expect = 2.6
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -2
Query: 478 LLPSEILHALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTK---HLLLFLKWGCS* 308
++P IL L + + + Q + W HS + P + +L L L WG
Sbjct: 896 IIPHHILDFLEIDSTLHSNNISILQELYERCWSHSNEESFSPCSLAWLYLHLRLLWGAIL 955
Query: 307 HSSR*WFLALYVNCRLRSWRISHICSV 227
HS+ +FL ++ L +W + + SV
Sbjct: 956 HSALIYFLGTFLLSILIAWTVQYFQSV 982
>UniRef50_Q23MM3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 478
Score = 33.1 bits (72), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 94 SSNTGCITYFSRSKTNHRTTRCCWHGWINPCTSCYS 201
S++T C+ Y+ + ++C G +N CTSC S
Sbjct: 350 SNSTSCVEYYQDIPCYYTCSQCSMPGSVNSCTSCIS 385
>UniRef50_UPI0000D56085 Cluster: PREDICTED: similar to CG9484-PA; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CG9484-PA
- Tribolium castaneum
Length = 2849
Score = 32.7 bits (71), Expect = 4.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 335 KQMLGERLFPVIQRMHPDLAGKI 403
+Q LG+RL+P + +HP+ AG+I
Sbjct: 2468 QQQLGDRLYPKVYNLHPNFAGRI 2490
>UniRef50_A2YEJ3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 276
Score = 32.3 bits (70), Expect = 6.0
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLE+D +E+L+++E ++L+ KV
Sbjct: 213 TGMLLELDKTEVLNLVESPDTLRDKV 238
>UniRef50_Q7PWH7 Cluster: ENSANGP00000019422; n=7; Culicidae|Rep:
ENSANGP00000019422 - Anopheles gambiae str. PEST
Length = 588
Score = 32.3 bits (70), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 36 LKHLHRLTQICNHPTVLHQELQHR 107
LKH LT + HPT++H E +HR
Sbjct: 463 LKHFRTLTALRRHPTLVHGEFKHR 486
>UniRef50_UPI0000E2189C Cluster: PREDICTED: similar to phogrin; n=2;
Pan troglodytes|Rep: PREDICTED: similar to phogrin - Pan
troglodytes
Length = 1363
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 125 LGARPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQ 280
L + + G++G+ G A RAPL + SRP A +P AP+P ++
Sbjct: 768 LAGKVVRGRRGLGGCA---RAPLASARSRPGRELPEATRGSPAAPRPGPQVR 816
>UniRef50_Q0F3C0 Cluster: UvrD/REP helicase family protein; n=1;
Mariprofundus ferrooxydans PV-1|Rep: UvrD/REP helicase
family protein - Mariprofundus ferrooxydans PV-1
Length = 1105
Score = 31.9 bits (69), Expect = 7.9
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 33 ALKHLHRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSV 185
AL+ + L +PT L +L +R+H++L+ D+ QD +L RL QS+
Sbjct: 374 ALRAMRALEDEAGNPTDLLLKLDYRIHHILV---DEFQDTSLLQIRLLQSL 421
>UniRef50_A7RV65 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1514
Score = 31.9 bits (69), Expect = 7.9
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 128 GARPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQGQ 286
GAR ITG QG G+ G+ AP P G + R PP P+ + I G+
Sbjct: 471 GARGITGPQGETGSDGAQGAPGEGGLQGPIGLQ---GQRGPPGPKGSRGIAGE 520
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,177,985
Number of Sequences: 1657284
Number of extensions: 9715158
Number of successful extensions: 29423
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 28108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29400
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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