Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M15
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.023
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.49
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.1
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 2.0
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 6.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 8.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.1 bits (72), Expect = 0.023
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+ NSELL +LE +L +V+
Sbjct: 609 TGMLLEMPNSELLELLEDDSALNERVN 635
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 326 QEQKQMLGERLFPVIQRMHPDLAGKI 403
+ +KQ+LGE L+P + L+GKI
Sbjct: 583 ESRKQVLGELLYPKVFVREEKLSGKI 608
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.7 bits (61), Expect = 0.49
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +3
Query: 15 NHL*DQALKHLHRLTQICNHP-TVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHL 191
+ L D A + + +C+ TVL Q R+ +L+ + ++ L+ ++ HL
Sbjct: 115 SRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHL 174
Query: 192 LLLKAAVQLVINTLQICEILQL 257
L L V VI T E++QL
Sbjct: 175 LRLVEQVNAVIGTFYTGELMQL 196
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 37 SNTCIGLRKYATTLPSSTKS-SNTGCITYFSRSKTNHRTT 153
S+T GL ++T+PSST+S SN+ + S SK + +T
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSST 1026
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.0
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 36 LKHLHRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLL--LKAA 209
LK L RL++ICN +L E ++ L L + Q+N +L + Q + LL +
Sbjct: 488 LKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRG 547
Query: 210 VQLVINTLQICEILQLRSL 266
Q + Q E L+L L
Sbjct: 548 CQKAVIVSQYKETLELIEL 566
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 366 SFKECIQIWLVKYWYAFRN*QF*ASSYVRAWRIS 467
SF + I +++ ++WYAF N F +W IS
Sbjct: 970 SFYKNIALYMTQFWYAFCN-AFSGQVIFESWSIS 1002
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 134 RPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQP 265
RPI + + PL SSR + AN + PP P P
Sbjct: 273 RPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 6.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 131 ARPITGQQGVAGTA----GSIRAPLVTQSSRPAGYKYTANMRNPPAPQ 262
A P G G+ ++ GSIR+P +T +S A T N+ A Q
Sbjct: 327 ANPAYGSTGIRSSSIPSSGSIRSPSLTTTSAQATTNATNNITTTTAAQ 374
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 30 QALKHLHRLTQICNHPTVLH 89
Q LK + L +ICNHP +L+
Sbjct: 557 QPLKAIGLLKKICNHPDLLN 576
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 8.0
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 30 QALKHLHRLTQICNHPTVLHQE-LQHRLHYVLL*EQDQSQDNKVLLARL---DQSVHLLL 197
Q L + L +ICNHP ++ +E L H+ Y + ++S KV+ A L + H L
Sbjct: 587 QMLYGIDILRKICNHPDLVTREYLLHKEDY-NYGDPEKSGKLKVIRALLTLWKKQGHRTL 645
Query: 198 LKAAVQLVINTLQI 239
L + + +++ L+I
Sbjct: 646 LFSQTRQMLDILEI 659
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,881
Number of Sequences: 5004
Number of extensions: 40129
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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