Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M15
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 77 4e-14
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 77 4e-14
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 77 4e-14
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 77 4e-14
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 77 4e-14
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 77 4e-14
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 77 4e-14
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 77 4e-14
AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protei... 77 4e-14
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 77 4e-14
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 77 4e-14
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 77 4e-14
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 77 4e-14
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 77 4e-14
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 76 6e-14
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 73 5e-13
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 73 5e-13
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 73 5e-13
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 73 5e-13
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 73 5e-13
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 72 1e-12
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 70 5e-12
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 69 7e-12
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 69 7e-12
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 69 7e-12
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 69 7e-12
AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens ... 62 8e-10
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 55 1e-07
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 55 1e-07
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 55 1e-07
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 55 1e-07
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 55 1e-07
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 55 1e-07
BC060867-1|AAH60867.1| 979|Homo sapiens KIAA0746 protein protein. 33 0.40
BC009945-1|AAH09945.2| 702|Homo sapiens KIAA0746 protein protein. 33 0.40
AB018289-1|BAA34466.1| 1029|Homo sapiens KIAA0746 protein protein. 33 0.40
AL109839-6|CAI95635.1| 134|Homo sapiens chromosome 20 open read... 32 1.2
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 31 2.2
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 31 2.2
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 31 2.2
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3... 29 8.7
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha... 29 8.7
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKI 590
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 591 TGMLLEIDNSELLHMLESPESLRSKVD 617
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKI 590
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 591 TGMLLEIDNSELLHMLESPESLRSKVD 617
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKI 606
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 607 TGMLLEIDNSELLHMLESPESLRSKVD 633
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 496 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 555
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 556 QMLGERLFPLIQTMHSNLAGKI 577
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 578 TGMLLEIDNSELLHMLESPESLRSKVD 604
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKI 590
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 591 TGMLLEIDNSELLHMLESPESLRSKVD 617
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKI 606
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 607 TGMLLEIDNSELLHMLESPESLRSKVD 633
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 480 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 539
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 540 QMLGERLFPLIQTMHSNLAGKI 561
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 562 TGMLLEIDNSELLHMLESPESLRSKVD 588
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 275 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 334
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 335 QMLGERLFPLIQTMHSNLAGKI 356
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 357 TGMLLEIDNSELLHMLESPESLRSKVD 383
>AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 194
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 63 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 122
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 123 QMLGERLFPLIQTMHSNLAGKI 144
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 145 TGMLLEIDNSELLHMLESPESLRSKVD 171
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKI 590
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 591 TGMLLEIDNSELLHMLESPESLRSKVD 617
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKI 606
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 607 TGMLLEIDNSELLHMLESPESLRSKVD 633
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 480 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 539
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 540 QMLGERLFPLIQTMHSNLAGKI 561
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 562 TGMLLEIDNSELLHMLESPESLRSKVD 588
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 236 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 295
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 296 QMLGERLFPLIQTMHSNLAGKI 317
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 318 TGMLLEIDNSELLHMLESPESLRSKVD 344
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 76.6 bits (180), Expect = 4e-14
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 223 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 282
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 283 QMLGERLFPLIQTMHSNLAGKI 304
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 305 TGMLLEIDNSELLHMLESPESLRSKVD 331
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 76.2 bits (179), Expect = 6e-14
Identities = 42/82 (51%), Positives = 50/82 (60%), Gaps = 8/82 (9%)
Frame = +2
Query: 182 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 337
RA + + R A YKY +++R P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRGPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 338 QMLGERLFPVIQRMHPDLAGKI 403
QMLGERLFP+IQ MH +LAGKI
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKI 606
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 607 TGMLLEIDNSELLHMLESPESLRSKVD 633
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 72.9 bits (171), Expect = 5e-13
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Frame = +2
Query: 221 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVI 370
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFP+I
Sbjct: 508 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 567
Query: 371 QRMHPDLAGKI 403
Q MHP LAGKI
Sbjct: 568 QAMHPTLAGKI 578
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 579 TGMLLEIDNSELLHMLESPESLRSKVD 605
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 72.9 bits (171), Expect = 5e-13
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Frame = +2
Query: 221 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVI 370
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFP+I
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 371 QRMHPDLAGKI 403
Q MHP LAGKI
Sbjct: 571 QAMHPTLAGKI 581
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 582 TGMLLEIDNSELLHMLESPESLRSKVD 608
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 72.9 bits (171), Expect = 5e-13
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Frame = +2
Query: 221 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVI 370
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFP+I
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 371 QRMHPDLAGKI 403
Q MHP LAGKI
Sbjct: 571 QAMHPTLAGKI 581
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 582 TGMLLEIDNSELLHMLESPESLRSKVD 608
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 72.9 bits (171), Expect = 5e-13
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Frame = +2
Query: 221 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVI 370
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFP+I
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 371 QRMHPDLAGKI 403
Q MHP LAGKI
Sbjct: 571 QAMHPTLAGKI 581
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 582 TGMLLEIDNSELLHMLESPESLRSKVD 608
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 72.9 bits (171), Expect = 5e-13
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Frame = +2
Query: 221 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVI 370
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFP+I
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 371 QRMHPDLAGKI 403
Q MHP LAGKI
Sbjct: 571 QAMHPTLAGKI 581
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 582 TGMLLEIDNSELLHMLESPESLRSKVD 608
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 71.7 bits (168), Expect = 1e-12
Identities = 45/98 (45%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Frame = +2
Query: 143 TGQQGVAGTAGSIRAPLVTQSSRPAG-YKYTANMRNPPA---PQP-------AVHIQGQE 289
T Q V + RA T + R YKY A +RNP QP AVH+QGQE
Sbjct: 479 TSTQTVGPRPAAARAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQE 538
Query: 290 XXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQMLGERLFP+IQ MHP LAGKI
Sbjct: 539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Score = 46.8 bits (106), Expect = 4e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL+MLE ESL++KVD
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVD 603
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 69.7 bits (163), Expect = 5e-12
Identities = 32/49 (65%), Positives = 34/49 (69%)
Frame = +2
Query: 257 PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
P PAVH+QGQE QEQKQMLGERLFP+IQ MHP LAGKI
Sbjct: 419 PHPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKI 467
Score = 49.2 bits (112), Expect = 8e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELLHMLE ESL++KVD
Sbjct: 468 TGMLLEIDNSELLHMLESPESLRSKVD 494
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 69.3 bits (162), Expect = 7e-12
Identities = 43/91 (47%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Frame = +2
Query: 161 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 310
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 311 XXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQMLGERLFP+IQ MHP LAGKI
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Score = 46.8 bits (106), Expect = 4e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL+MLE ESL++KVD
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVD 603
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 69.3 bits (162), Expect = 7e-12
Identities = 43/91 (47%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Frame = +2
Query: 161 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 310
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 311 XXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQMLGERLFP+IQ MHP LAGKI
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Score = 46.8 bits (106), Expect = 4e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL+MLE ESL++KVD
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVD 603
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 69.3 bits (162), Expect = 7e-12
Identities = 43/91 (47%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Frame = +2
Query: 161 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 310
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 311 XXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQMLGERLFP+IQ MHP LAGKI
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Score = 46.8 bits (106), Expect = 4e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL+MLE ESL++KVD
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVD 603
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 69.3 bits (162), Expect = 7e-12
Identities = 43/91 (47%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Frame = +2
Query: 161 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 310
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 311 XXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
Q+QKQMLGERLFP+IQ MHP LAGKI
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Score = 46.8 bits (106), Expect = 4e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL+MLE ESL++KVD
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVD 603
>AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ45986 fis, clone PUAEN2000594, highly similar
to Polyadenylate-binding protein 1. ).
Length = 146
Score = 62.5 bits (145), Expect = 8e-10
Identities = 36/71 (50%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +2
Query: 221 YKYTANMRNPP----------APQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVI 370
YKY A + NP QPA+H+QGQE QEQKQMLGE LFP+I
Sbjct: 22 YKYAAGVCNPQQHLNAQPQVTVQQPAIHVQGQEPLTVSMLASAP-QEQKQMLGEWLFPLI 80
Query: 371 QRMHPDLAGKI 403
Q MHP LAGKI
Sbjct: 81 QAMHPTLAGKI 91
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TG+LLEIDNSELLHML+ ESL +KVD
Sbjct: 92 TGVLLEIDNSELLHMLKSPESLHSKVD 118
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 121
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL MLE ESL AK+D
Sbjct: 122 TGMLLEIDNSELLLMLESPESLHAKID 148
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 121
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAK 477
TGMLLEIDNSELL MLE ESL AK
Sbjct: 122 TGMLLEIDNSELLLMLESPESLHAK 146
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 121
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKV 480
TGMLLEIDNSELL MLE ESL AK+
Sbjct: 122 TGMLLEIDNSELLLMLESPESLHAKI 147
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 55 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 102
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAK 477
TGMLLEIDNSELL MLE ESL AK
Sbjct: 103 TGMLLEIDNSELLLMLESPESLHAK 127
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 520 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 567
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL MLE ESL AK+D
Sbjct: 568 TGMLLEIDNSELLLMLESPESLHAKID 594
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPDLAGKI 403
+PAVHI GQE EQKQM+GERL+P+I +H LAGKI
Sbjct: 520 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 567
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLEIDNSELL MLE ESL AK+D
Sbjct: 568 TGMLLEIDNSELLLMLESPESLHAKID 594
>BC060867-1|AAH60867.1| 979|Homo sapiens KIAA0746 protein protein.
Length = 979
Score = 33.5 bits (73), Expect = 0.40
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -2
Query: 478 LLPSEILHALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTK---HLLLFLKWGCS* 308
++P IL L + + + Q + W HS + P + +L L L WG
Sbjct: 846 IIPHHILDFLEIDSTLHSNNISILQELYERCWSHSNEESFSPCSLAWLYLHLRLLWGAIL 905
Query: 307 HSSR*WFLALYVNCRLRSWRISHICSV 227
HS+ +FL ++ L +W + + SV
Sbjct: 906 HSALIYFLGTFLLSILIAWTVQYFQSV 932
>BC009945-1|AAH09945.2| 702|Homo sapiens KIAA0746 protein protein.
Length = 702
Score = 33.5 bits (73), Expect = 0.40
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -2
Query: 478 LLPSEILHALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTK---HLLLFLKWGCS* 308
++P IL L + + + Q + W HS + P + +L L L WG
Sbjct: 569 IIPHHILDFLEIDSTLHSNNISILQELYERCWSHSNEESFSPCSLAWLYLHLRLLWGAIL 628
Query: 307 HSSR*WFLALYVNCRLRSWRISHICSV 227
HS+ +FL ++ L +W + + SV
Sbjct: 629 HSALIYFLGTFLLSILIAWTVQYFQSV 655
>AB018289-1|BAA34466.1| 1029|Homo sapiens KIAA0746 protein protein.
Length = 1029
Score = 33.5 bits (73), Expect = 0.40
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -2
Query: 478 LLPSEILHALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTK---HLLLFLKWGCS* 308
++P IL L + + + Q + W HS + P + +L L L WG
Sbjct: 896 IIPHHILDFLEIDSTLHSNNISILQELYERCWSHSNEESFSPCSLAWLYLHLRLLWGAIL 955
Query: 307 HSSR*WFLALYVNCRLRSWRISHICSV 227
HS+ +FL ++ L +W + + SV
Sbjct: 956 HSALIYFLGTFLLSILIAWTVQYFQSV 982
>AL109839-6|CAI95635.1| 134|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 134
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLG 349
+PAVHI GQE EQKQM+G
Sbjct: 15 EPAVHIPGQEPLTASMLAAAPLHEQKQMIG 44
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 31.1 bits (67), Expect = 2.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 335 KQMLGERLFPVIQRMHPDLAGKI 403
+Q LGERL+P +Q M P A KI
Sbjct: 2393 RQALGERLYPRVQAMQPAFASKI 2415
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+ ++LL +L +SL+A+VD
Sbjct: 2416 TGMLLELSPAQLLLLLASEDSLRARVD 2442
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 31.1 bits (67), Expect = 2.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 335 KQMLGERLFPVIQRMHPDLAGKI 403
+Q LGERL+P +Q M P A KI
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKI 2416
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+ ++LL +L +SL+A+VD
Sbjct: 2417 TGMLLELSPAQLLLLLASEDSLRARVD 2443
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 31.1 bits (67), Expect = 2.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 335 KQMLGERLFPVIQRMHPDLAGKI 403
+Q LGERL+P +Q M P A KI
Sbjct: 2416 RQALGERLYPRVQAMQPAFASKI 2438
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 403 TGMLLEIDNSELLHMLEHGESLKAKVD 483
TGMLLE+ ++LL +L +SL+A+VD
Sbjct: 2439 TGMLLELSPAQLLLLLASEDSLRARVD 2465
>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
chain protein.
Length = 1745
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 125 LGARPITGQQGVAGTAGSIRAPLVTQSSRP---AGYKYTANMRNPPAP 259
+GA G++G G AG I P + S P AG K + R PP P
Sbjct: 1003 VGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGP 1050
>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
preproprotein variant protein.
Length = 1658
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 125 LGARPITGQQGVAGTAGSIRAPLVTQSSRP---AGYKYTANMRNPPAP 259
+GA G++G G AG I P + S P AG K + R PP P
Sbjct: 916 VGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSPGERGPPGP 963
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,457,949
Number of Sequences: 237096
Number of extensions: 1652668
Number of successful extensions: 4318
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4298
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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