Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M15
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 3e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 41 4e-04
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 34 0.048
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.34
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 31 0.59
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 31 0.59
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 29 1.4
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 29 1.8
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 29 1.8
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 29 1.8
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 29 1.8
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor... 28 3.1
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor... 28 3.1
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch... 28 3.1
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 28 4.1
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 27 5.5
Z92789-2|CAB07219.1| 344|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL132865-12|CAB60601.1| 345|Caenorhabditis elegans Hypothetical... 27 7.2
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 27 7.2
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 27 7.2
Z82273-1|CAB54978.2| 565|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z82263-7|CAJ76937.1| 565|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical ... 27 9.5
AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical ... 27 9.5
AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical ... 27 9.5
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 9.5
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 27 9.5
AF003137-7|AAN84856.1| 433|Caenorhabditis elegans Hypothetical ... 27 9.5
AF003137-6|AAB93644.1| 497|Caenorhabditis elegans Hypothetical ... 27 9.5
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 352 KAFPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKVD 483
K +P H K+A + TGM+LEIDNSEL+ ML+ E ++KVD
Sbjct: 596 KLYPGH-KDAGKI----TGMMLEIDNSELIMMLQDSELFRSKVD 634
Score = 40.3 bits (90), Expect = 7e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 182 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 340
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 529 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 584
Query: 341 MLGERLFPVIQRMHPDL--AGKI 403
+LGER++ +I++++P AGKI
Sbjct: 585 LLGERIYALIEKLYPGHKDAGKI 607
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 352 KAFPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKVD 483
K +P H K+A + TGM+LEIDNSEL+ ML+ E ++KVD
Sbjct: 536 KLYPGH-KDAGKI----TGMMLEIDNSELIMMLQDSELFRSKVD 574
Score = 40.3 bits (90), Expect = 7e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 182 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 340
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 469 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 524
Query: 341 MLGERLFPVIQRMHPDL--AGKI 403
+LGER++ +I++++P AGKI
Sbjct: 525 LLGERIYALIEKLYPGHKDAGKI 547
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 352 KAFPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKVD 483
K +P H K+A + TGM+LEIDNSEL+ ML+ E ++KVD
Sbjct: 533 KLYPGH-KDAGKI----TGMMLEIDNSELIMMLQDSELFRSKVD 571
Score = 40.3 bits (90), Expect = 7e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 182 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 340
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 466 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 521
Query: 341 MLGERLFPVIQRMHPDL--AGKI 403
+LGER++ +I++++P AGKI
Sbjct: 522 LLGERIYALIEKLYPGHKDAGKI 544
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 352 KAFPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKVD 483
K +P H K+A + TGM+LEIDNSEL+ ML+ E ++KVD
Sbjct: 596 KLYPGH-KDAGKI----TGMMLEIDNSELIMMLQDSELFRSKVD 634
Score = 40.3 bits (90), Expect = 7e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 182 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 340
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 529 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 584
Query: 341 MLGERLFPVIQRMHPDL--AGKI 403
+LGER++ +I++++P AGKI
Sbjct: 585 LLGERIYALIEKLYPGHKDAGKI 607
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQRMHPD--LAGKI 403
Q + I GQE QEQKQ+LGER++ +I++M P+ AGKI
Sbjct: 593 QSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKI 642
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +1
Query: 352 KAFPSHSKNASRFGW*NTGMLLEIDNSELLHMLEHGESLKAKVD 483
K FP+H K A + TGM+LEIDN+EL+ ML+ E ++KV+
Sbjct: 631 KMFPNH-KEAGKI----TGMMLEIDNAELIMMLQDAELFRSKVE 669
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 34.3 bits (75), Expect = 0.048
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 CPTTCKTKHSNTCI--GLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHGWINP 183
C TC SN C G + +PSS+++ C S + T + C + +
Sbjct: 145 CTNTCSNSCSNACSNGGNQPIVIVIPSSSRNCQNSCQNQCSSACTTMTCRQTCQNTCLGS 204
Query: 184 CTSC 195
C SC
Sbjct: 205 CNSC 208
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 13 PTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRC---CWHGWINP 183
PTT T + T +TT + T + + T + KT T++C C GW+
Sbjct: 280 PTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTTPKTPFDTSKCTVMCSTGWVYY 339
Query: 184 CTSCYSK 204
CY+K
Sbjct: 340 NNLCYAK 346
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGC-ITYFSRSKTNHRTTRCCWHGWINPC 186
CPT S +GL K A T+ K S +GC + + KT H C + + PC
Sbjct: 121 CPTCRGPTPSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEEL-CEFRPYCCPC 179
Query: 187 TSCYSK 204
K
Sbjct: 180 PGASCK 185
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGC-ITYFSRSKTNHRTTRCCWHGWINPC 186
CPT S +GL K A T+ K S +GC + + KT H C + + PC
Sbjct: 187 CPTCRGPTPSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEEL-CEFRPYCCPC 245
Query: 187 TSCYSK 204
K
Sbjct: 246 PGASCK 251
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 125 LGARPITGQQGVAGTAGSIRAPLVTQSSRPAGY-KYTANMRNPPAPQPAVHIQG 283
LG IT Q V P + PAG K TA R PPAP+P I G
Sbjct: 266 LGRTRITEQNPVKEAQAKESTPELADLPLPAGRRKSTAAPRAPPAPKPIPVING 319
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 1 ARGCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 126
A C T C++ SN+C + T S + S+ C T +S
Sbjct: 393 AAQCQTACQSSCSNSCQAAQPATTACQQSPQQSSCSCQTNYS 434
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 25 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 171
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 24 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 71
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 25 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 171
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 8 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 55
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 25 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 171
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 8 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 55
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 25 KTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRCCWHG 171
K C+ +A+ + S S N GC T+F R+ N +T C + G
Sbjct: 8 KIPEGTLCVVCSDFASGIHYSVASCN-GCKTFFRRALVNKQTFTCQFSG 55
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 191 LVTQSSRPAGYKYTANMRNPPAPQ 262
LV + + AGY YT +N PAPQ
Sbjct: 1117 LVREYNEEAGYAYTLPRKNKPAPQ 1140
>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
protein protein1, isoform b protein.
Length = 1284
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 478 LLPSEILH--ALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTKHLLLF 329
+LP +LH +L Y ++ ++ + + +HS+ D P TKH++ F
Sbjct: 841 VLPLPVLHRISLIYTQSTEHEYAGVRKVENRLMRVHSVTDPTYPLTKHIMFF 892
>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein1, isoform a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 478 LLPSEILH--ALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTKHLLLF 329
+LP +LH +L Y ++ ++ + + +HS+ D P TKH++ F
Sbjct: 837 VLPLPVLHRISLIYTQSTEHEYAGVRKVENRLMRVHSVTDPTYPLTKHIMFF 888
>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein.
Length = 1280
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 478 LLPSEILH--ALTYEEAQNCQFLKAYQYFTSQIWMHSLNDWEKPFTKHLLLF 329
+LP +LH +L Y ++ ++ + + +HS+ D P TKH++ F
Sbjct: 837 VLPLPVLHRISLIYTQSTEHEYAGVRKVENRLMRVHSVTDPTYPLTKHIMFF 888
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 146 GQQGVAGTAGSI-RAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQG 283
G+QGV+G G+ R + + PAG+K +R PP P+ + G
Sbjct: 203 GRQGVSGPKGAPGRINQINGPAGPAGHK---GVRGPPGPRGEAGLDG 246
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 ARGCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 126
A C T C++ SN+C + T S + S+ C +S
Sbjct: 336 AAQCQTACQSSCSNSCQAAQPATTACQQSPQQSSCSCQANYS 377
>Z92789-2|CAB07219.1| 344|Caenorhabditis elegans Hypothetical
protein H02I12.5 protein.
Length = 344
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 418 LKAYQYFTSQIWMHSLNDWEKPFTKHLLL 332
LK Y +F SQ W ++ + EK +H+LL
Sbjct: 107 LKRYDFF-SQRWFNTTRESEKALVEHVLL 134
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 484 HPLLPSEILHALTYEEAQNCQFLKAYQYFTSQIWM 380
H L P IL L +++ N FL A YF WM
Sbjct: 744 HDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWM 778
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 484 HPLLPSEILHALTYEEAQNCQFLKAYQYFTSQIWM 380
H L P IL L +++ N FL A YF WM
Sbjct: 765 HDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWM 799
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 484 HPLLPSEILHALTYEEAQNCQFLKAYQYFTSQIWM 380
H L P IL L +++ N FL A YF WM
Sbjct: 765 HDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWM 799
>Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical
protein C38D4.4 protein.
Length = 556
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 17 PPVRPSTQTPASAYAN 64
PPVRPST T S++AN
Sbjct: 161 PPVRPSTATGHSSFAN 176
>AL132865-12|CAB60601.1| 345|Caenorhabditis elegans Hypothetical
protein Y62E10A.14 protein.
Length = 345
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 418 LKAYQYFTSQIWMHSLNDWEKPFTKHLLL 332
LK Y +F SQ W ++ + EK +H+LL
Sbjct: 107 LKRYDFF-SQRWFNTTRESEKALVEHVLL 134
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 484 HPLLPSEILHALTYEEAQNCQFLKAYQYFTSQIWM 380
H L P IL L +++ N FL A YF WM
Sbjct: 765 HDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWM 799
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 484 HPLLPSEILHALTYEEAQNCQFLKAYQYFTSQIWM 380
H L P IL L +++ N FL A YF WM
Sbjct: 765 HDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWM 799
>Z82273-1|CAB54978.2| 565|Caenorhabditis elegans Hypothetical
protein F56F12.1 protein.
Length = 565
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 2 HEAAQPPVRPSTQTPASAYANMQ 70
H ++PPV PST+ P SA +Q
Sbjct: 136 HNESKPPVPPSTKPPHSAAQALQ 158
>Z82263-7|CAJ76937.1| 565|Caenorhabditis elegans Hypothetical
protein F56F12.1 protein.
Length = 565
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 2 HEAAQPPVRPSTQTPASAYANMQ 70
H ++PPV PST+ P SA +Q
Sbjct: 136 HNESKPPVPPSTKPPHSAAQALQ 158
>AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical
protein W04B5.3c protein.
Length = 353
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 185 APLVTQSS-RPAGYKYTANMRNPPAPQP 265
AP +TQ+ PAG YT+ + P PQP
Sbjct: 254 APPITQAPPTPAGAAYTSPYTSVPMPQP 281
>AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3a protein.
Length = 426
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 185 APLVTQSS-RPAGYKYTANMRNPPAPQP 265
AP +TQ+ PAG YT+ + P PQP
Sbjct: 254 APPITQAPPTPAGAAYTSPYTSVPMPQP 281
>AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3b protein.
Length = 426
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 185 APLVTQSS-RPAGYKYTANMRNPPAPQP 265
AP +TQ+ PAG YT+ + P PQP
Sbjct: 254 APPITQAPPTPAGAAYTSPYTSVPMPQP 281
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 ARGCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 126
A C T C++ SN+C + T S + S+ C +S
Sbjct: 386 AAQCQTACQSSCSNSCQTAQPATTACQQSPQQSSCSCQANYS 427
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 ARGCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 126
A C T C++ SN+C + T S + S+ C +S
Sbjct: 336 AAQCQTACQSSCSNSCQTAQPATTACQQSPQQSSCSCQANYS 377
>AF003137-7|AAN84856.1| 433|Caenorhabditis elegans Hypothetical
protein C27A12.7b protein.
Length = 433
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 113 MQPVLELLVEDGRVVAYLRKP 51
M P +LL+ED +V+AY++ P
Sbjct: 109 MAPNCKLLIEDEKVLAYIKDP 129
>AF003137-6|AAB93644.1| 497|Caenorhabditis elegans Hypothetical
protein C27A12.7a protein.
Length = 497
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 113 MQPVLELLVEDGRVVAYLRKP 51
M P +LL+ED +V+AY++ P
Sbjct: 173 MAPNCKLLIEDEKVLAYIKDP 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,139
Number of Sequences: 27780
Number of extensions: 231883
Number of successful extensions: 807
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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