Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M15
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 54  LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKA 206
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L L A
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLA 294


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 54  LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKA 206
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L L A
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLA 294


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 12/50 (24%), Positives = 17/50 (34%)
 Frame = +2

Query: 227 YTANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPVIQR 376
           Y  ++RN     P  H Q               Q+Q Q  G+   P + R
Sbjct: 9   YIPDLRNGGVEHPHQHQQHYGAAVQVPQQTQSVQQQSQQAGDPCDPSLLR 58


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 262 LRSWRISHICSVFITSWTAALSNKR 188
           L  W++  I  +++ +  A + N+R
Sbjct: 492 LEGWKVEKIQEIYLEALRAYVDNRR 516


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 115 TYFSRSKTNHRTTRCC 162
           T     KT H+ T CC
Sbjct: 815 TMTKSGKTRHQNTGCC 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,413
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)