Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M14
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.31
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.31
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.31
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.31
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.31
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.31
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.31
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.31
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.31
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.31
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.31
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.72
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 2.9
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.9
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 25 8.9
SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.9
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.31
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED---- 188
++++I Y G+ N +AD SR+ + E + K + V+ + IT+D
Sbjct: 811 FNFEINYRPGSANHIADALSRIVDETEP-------IPKDSEDNSINFVNQISITDDFKNQ 863
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDEIKPYARKCSELSVENKIILWHSRLVIPH- 365
+ EYT D L N++ N ++ + L + +K ++++P+
Sbjct: 864 VVTEYTN-DTKLLNLLN---------NEDKRVEENIQLKDGLLINSK-----DQILLPND 908
Query: 366 --ALRYAILKFLHSG---HPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQEN 515
R I K+ G HPG + + W I + + YV+ C CQ N
Sbjct: 909 TQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 28.3 bits (60), Expect = 0.72
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELS--VCKIETRLQADRVSDLPITE 185
Y Y IT + N++ + F ++P+PDE+ S ++ V +++T D +S +P E
Sbjct: 415 YAYSITSSHSNHS--NEKFEQIPSPDEKLSRTDIDTHVKQLQTTKSTDSLS-IPFVE 468
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +3
Query: 57 NIMADYFSRMPNPDEQHSEAE------LSVCKIETRLQADRVSDLPITEDCIKEYT 206
+++A Y S++P P E H++ E +CK E L+ +S +T D + ++
Sbjct: 277 SLLAAYGSKVPKPSETHTDPEKDKKIFSKICKTEELLELPTLS--AVTSDSAQPHS 330
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 6.7
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +3
Query: 132 KIETRLQADRVSDLPITEDCIKEYTK--KDPVLKNVVQYIRFG*REQNYSDEIKPYARKC 305
K++T + ++R + + E+ K T K KN V + G N+S+ IKP K
Sbjct: 450 KVQTEMVSNR-GEAVLNENNSKNRTNVTKPNSYKNSV--LSIGNNHSNHSNIIKPNTYKN 506
Query: 306 SELSVENKIILWHSRLVIPHALRYAILKFLHSGHPGTS 419
+ LS EN + + + + ++ + HPG +
Sbjct: 507 TILSNENNTPNYSNVCLSTSLINRSLPSLKSTMHPGVN 544
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +1
Query: 67 QTTFLGCLTLTSNTQKLNFLFVK*KLVYK 153
+ F+ CL + N +K+N ++ + ++YK
Sbjct: 458 EEAFMQCLRMDPNFEKVNEIYFRLGIIYK 486
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 8.9
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +3
Query: 27 YDITYTKGNNNIMADYFSRMPNP 95
Y + +G+++++ DY + +PNP
Sbjct: 52 YCADWDRGDDHVVVDYINLIPNP 74
>SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 352 SLLCHKIILFSTESSLHFRAYGF 284
+LLCH I F T+ L RA+ F
Sbjct: 13 NLLCHVRIHFKTKEDLDIRAFLF 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,046
Number of Sequences: 5004
Number of extensions: 40364
Number of successful extensions: 111
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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