Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M14
(516 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 36 0.025
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 36 0.033
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 36 0.043
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 35 0.057
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 35 0.057
AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 35 0.057
AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 34 0.099
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 34 0.099
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 34 0.099
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 33 0.30
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 31 0.93
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 30 1.6
BT023377-1|AAY55793.1| 188|Drosophila melanogaster IP01917p pro... 30 2.1
AE014297-4128|AAF56713.2| 391|Drosophila melanogaster CG13976-P... 30 2.1
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 9 RIGSYDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQADRVSDLPITED 188
R+ YD+DI Y KG N +AD SR+ + +EA + Q D + + +TE
Sbjct: 546 RLAEYDFDIKYVKGKENHVADALSRITIEEAFFTEA------TQHSAQEDNQNLISLTEK 599
Query: 189 CIKEYTKK 212
+ Y ++
Sbjct: 600 AVNNYNRQ 607
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 35.9 bits (79), Expect = 0.033
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 393 LHSGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQE 512
+ GH G S ++ + + +W + + + YVK C KCQ+
Sbjct: 663 IEGGHTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQ 702
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 35.5 bits (78), Expect = 0.043
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 9 RIGSYDYDITYTKGNNNIMADYFSRMPNPDEQHSEA 116
++ YD+++ Y KG+ N++AD SR P H+EA
Sbjct: 598 QLQEYDFEVVYKKGSQNVIADALSR-PEASVNHNEA 632
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 378 AILKFLHS-----GHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQE 512
AIL LH GH G + A + + +W ++ + + YV++C KCQ+
Sbjct: 895 AILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQK 944
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 378 AILKFLHS-----GHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQE 512
AIL LH GH G + A + + +W ++ + + YV++C KCQ+
Sbjct: 658 AILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQK 707
>AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p
protein.
Length = 320
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 378 AILKFLHS-----GHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQE 512
AIL LH GH G + A + + +W ++ + + YV++C KCQ+
Sbjct: 46 AILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQK 95
>AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p
protein.
Length = 370
Score = 34.3 bits (75), Expect = 0.099
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 393 LHSGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQ 509
+ GH G + A + + +W ++ + Y++RC KCQ
Sbjct: 38 IQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQ 76
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 34.3 bits (75), Expect = 0.099
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 393 LHSGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQ 509
+ GH G + A + + +W ++ + Y++RC KCQ
Sbjct: 494 IQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQ 532
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 34.3 bits (75), Expect = 0.099
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 393 LHSGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKCQ 509
+ GH G + A + + +W ++ + Y++RC KCQ
Sbjct: 494 IQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQ 532
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 9 RIGSYDYDITYTKGNNNIMADYFSRM 86
R+ YD+DI Y KG N +AD SR+
Sbjct: 561 RLSEYDFDIKYIKGKENHVADALSRI 586
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 9 RIGSYDYDITYTKGNNNIMADYFSRM 86
++ +D+DIT+ KG N +AD SR+
Sbjct: 524 QLNEFDFDITFIKGKENALADGLSRI 549
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMPNPDEQHSEA 116
YDY+I Y G N +AD SR P ++ ++ A
Sbjct: 603 YDYEIFYKPGRENTVADALSRGPTVEQINTVA 634
>BT023377-1|AAY55793.1| 188|Drosophila melanogaster IP01917p
protein.
Length = 188
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 182 CYRKITNSVSL*TSFYFTNRKFSF*VLLVRVRHPRKVVCHYVIVSFCISYVIIV 21
CY +++ ++L F+ + + L RV H R V HYV CI + IV
Sbjct: 31 CYFQLS-LITLLMKFFIDTSALPYWLYLSRVEHTRVAVQHYVATVECIKLLEIV 83
>AE014297-4128|AAF56713.2| 391|Drosophila melanogaster CG13976-PA
protein.
Length = 391
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 182 CYRKITNSVSL*TSFYFTNRKFSF*VLLVRVRHPRKVVCHYVIVSFCISYVIIV 21
CY +++ ++L F+ + + L RV H R V HYV CI + IV
Sbjct: 234 CYFQLS-LITLLMKFFIDTSALPYWLYLSRVEHTRVAVQHYVATVECIKLLEIV 286
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,540,442
Number of Sequences: 53049
Number of extensions: 414332
Number of successful extensions: 1227
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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