Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M14
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 45 4e-05
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 45 4e-05
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 45 4e-05
Z81562-5|CAB04555.1| 408|Caenorhabditis elegans Hypothetical pr... 33 0.12
U80024-3|AAK18893.1| 342|Caenorhabditis elegans Seven tm recept... 33 0.12
AC006662-6|AAF39892.1| 274|Caenorhabditis elegans Hypothetical ... 29 2.6
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 28 3.4
U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical p... 28 4.6
U28992-4|AAA68392.1| 100|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL132851-1|CAB60411.1| 403|Caenorhabditis elegans Hypothetical ... 27 8.0
AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cycl... 27 8.0
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 44.8 bits (101), Expect = 4e-05
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMP-NPDEQHSEAELSVCKIETRLQADRVSDLPITEDCIK 197
+D I Y G N +AD SR P+E E + I +Q + + D+ + C
Sbjct: 1429 FDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTE-LPDI-LDSSCWL 1486
Query: 198 EYTK-KDPVLKNVVQYIRFG*REQNYS-----DEIKPYARKCSELSVENKIILWHSRLVI 359
E K +D K V+ + G + + EI K ++N I SR V+
Sbjct: 1487 ERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVV 1546
Query: 360 PHALRYAILKFLH----SGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKC 506
P +R +LK LH +GH G M + +W + V+ V+ C+KC
Sbjct: 1547 PEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1599
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 44.8 bits (101), Expect = 4e-05
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMP-NPDEQHSEAELSVCKIETRLQADRVSDLPITEDCIK 197
+D I Y G N +AD SR P+E E + I +Q + + D+ + C
Sbjct: 1332 FDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTE-LPDI-LDSSCWL 1389
Query: 198 EYTK-KDPVLKNVVQYIRFG*REQNYS-----DEIKPYARKCSELSVENKIILWHSRLVI 359
E K +D K V+ + G + + EI K ++N I SR V+
Sbjct: 1390 ERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVV 1449
Query: 360 PHALRYAILKFLH----SGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKC 506
P +R +LK LH +GH G M + +W + V+ V+ C+KC
Sbjct: 1450 PEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1502
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 44.8 bits (101), Expect = 4e-05
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Frame = +3
Query: 21 YDYDITYTKGNNNIMADYFSRMP-NPDEQHSEAELSVCKIETRLQADRVSDLPITEDCIK 197
+D I Y G N +AD SR P+E E + I +Q + + D+ + C
Sbjct: 1343 FDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTE-LPDI-LDSSCWL 1400
Query: 198 EYTK-KDPVLKNVVQYIRFG*REQNYS-----DEIKPYARKCSELSVENKIILWHSRLVI 359
E K +D K V+ + G + + EI K ++N I SR V+
Sbjct: 1401 ERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVV 1460
Query: 360 PHALRYAILKFLH----SGHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKC 506
P +R +LK LH +GH G M + +W + V+ V+ C+KC
Sbjct: 1461 PEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1513
>Z81562-5|CAB04555.1| 408|Caenorhabditis elegans Hypothetical
protein K03D7.8 protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +3
Query: 18 SYDYDITYTKGNNNIMADYFSRMPNPDEQHSEAELSVCKIETRLQA---DRVSDLPITED 188
+Y++ I Y + ++ AD SRM E ++ + ++E ++ + LPI
Sbjct: 319 AYNFKIEYVRTDDFGQADAKSRMIQKSPTEEE-DIVIAQVELDVEETLHSAIRKLPIRVT 377
Query: 189 CIKEYTKKDPVLKNVVQYIRFG*REQNYSDE 281
I+E T+KD VL+ +++ + G + S+E
Sbjct: 378 DIQEETRKDSVLQEILKGLSTGCWSKEGSEE 408
>U80024-3|AAK18893.1| 342|Caenorhabditis elegans Seven tm receptor
protein 190 protein.
Length = 342
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = -2
Query: 212 LFCILFYAVFCYRKITNSVSL*TSFYFTNRKFSF*VLLVRVRHPRKVVCHYVIVSFCISY 33
L C+ + V CY++++N++S+ + +K F L+++ P V+ H+ I F I
Sbjct: 209 LMCVFIFGVLCYKRLSNTLSIVSDAANNLQKQLFYSLVLQTLIP-LVLMHFPITIFFIGP 267
Query: 32 VIIVTTN 12
++ + T+
Sbjct: 268 MLTLDTD 274
>AC006662-6|AAF39892.1| 274|Caenorhabditis elegans Hypothetical
protein H23L24.1 protein.
Length = 274
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 75 SSLPLCYCFLLYKLCHNRNYQ 13
SS P+CYC L++LC +Q
Sbjct: 35 SSQPICYCVYLFQLCSFLKFQ 55
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 381 ILKFLHS--GHPGTSAMRALARYYVWWSSIEEDVDLYVKRCSKC 506
+L+ +H GH G + + ++W S+ +DV ++ C C
Sbjct: 117 VLERIHELIGHLGQKRTQMVVLRKLYWRSVRQDVKTFIASCDFC 160
>U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical
protein C33H5.2 protein.
Length = 507
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 411 PDVLNVEISKLHILVHVVSPV-YYAIK*SYFLQRVRC 304
PD+ + ++ HI +SPV YY K YF ++ C
Sbjct: 468 PDITCMRVNATHIERETLSPVTYYYAKDPYFTDKMGC 504
>U28992-4|AAA68392.1| 100|Caenorhabditis elegans Hypothetical
protein T05C1.5 protein.
Length = 100
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 238 CTTFFRTGSFFVYSFMQSSVIGRSLTLSACRRVS 137
C +FR F+ FM SSVI + L CR VS
Sbjct: 6 CCIYFRDMLQFLPFFMLSSVIISAQELKTCRTVS 39
>AL132851-1|CAB60411.1| 403|Caenorhabditis elegans Hypothetical
protein Y53H1B.1 protein.
Length = 403
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 256 HPNRIYCTTFFRTGSFFVYSFMQSSVIGRSLTLSACRR 143
HP+ + C R FFV SF+ +V+ LT+ RR
Sbjct: 355 HPSTVVCLNQSRIQIFFVLSFLMLTVV-TVLTIFTVRR 391
>AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cyclase
protein 4 protein.
Length = 954
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 170 SSYNRRLHKRVYKKGSCSKKRSTIYSIW 253
S Y+ K Y+K S KKRST+YS +
Sbjct: 58 SFYHFPWEKLRYRKNSQKKKRSTLYSFY 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,436,985
Number of Sequences: 27780
Number of extensions: 227561
Number of successful extensions: 615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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