Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M14
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.35 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   10.0 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   10.0 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   10.0 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   10.0 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 380 CIS*CMWY--HQSTMP*NNLIFYREFAAL 300
           C+S   W   H ST P N L++YR+  AL
Sbjct: 297 CMSDLHWQLPHNSTNPPNILLYYRDSLAL 325


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 265 CSRHPNRIYCTTFFRTGSFFVYSFMQSSVIGRSLTLSACRRVSILQTES 119
           CS + +  Y   F   GSFF+   +   V GR   + A R  ++  TES
Sbjct: 190 CSYNMDSSY-VIFSAMGSFFLPMLVMLYVYGRISCVIASRHRNLEATES 237


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 148 RRVSILQTESSASECCSSGL 89
           R  S+LQ ES  S C   G+
Sbjct: 2   RASSVLQAESDVSSCVIFGV 21


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 148 RRVSILQTESSASECCSSGL 89
           R  S+LQ ES  S C   G+
Sbjct: 2   RASSVLQAESDVSSCVIFGV 21


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 296 GIWFYFV*VILLTSS 252
           GIW YFV + L+  S
Sbjct: 221 GIWVYFVPLFLIIYS 235


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 18  SYDYDITYTKGNNNIMADY 74
           +Y+Y+  Y   NNN   +Y
Sbjct: 91  NYNYNNNYNNYNNNYNTNY 109


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 ADRVSDLPITEDCIKEYTKKD 215
           A   + LPIT  C++E  K D
Sbjct: 361 ASSAATLPITFRCLEENNKID 381


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 296 GIWFYFV*VILLTSS 252
           GIW YFV + L+  S
Sbjct: 97  GIWVYFVPLFLIIYS 111


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 367 ACGITSLLCHKIILFSTES 311
           AC   SL  HK++L +  S
Sbjct: 41  ACNEASLKAHKVVLSACSS 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,596
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)