Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M13
         (552 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   0.25 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   0.77 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.1  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   7.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 218 FRLYGGVVLP-QREPQPQPGVFEIGTTLLCGQVEAAVVDRPSRAILEI 78
           F+ +G   L  + +P+P  GV +   T LC ++  +VV + S  +  +
Sbjct: 102 FKEWGTTALTFEEDPEPFGGVRDHNLTTLCQELGISVVQKVSHTLYHL 149


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 363 ERKRTPRPVSLRTRSKRPLPPTPGQ 289
           E   TP+P   +   ++P PP P Q
Sbjct: 248 ENPPTPKPRPTKVSRRKPRPPRPTQ 272


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 238 HGPARNAVTPPRRCEPALTRCGGKRSLAPCAQR 336
           H P ++ +      +P  T    KR LAP  +R
Sbjct: 24  HSPQQSIIVSGSITQPTKTVIQSKRPLAPAPER 56



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 345 RPVSLRTRSKRPLPPTP 295
           +P     +SKRPL P P
Sbjct: 38  QPTKTVIQSKRPLAPAP 54


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 304 PHTGSAPARIFLAA*PHSSQDHASAAVMN-SVCTAASCCRNG 182
           PH  +A + +   A PH+   H  + + N  + T  +  R+G
Sbjct: 120 PHPAAAHSALLSPAMPHNLTRHDGSVIKNQGMPTMEAIARSG 161


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 372 SRPERKRTPRPVSLRTRSKR 313
           S+P  K  P+PV++  R+ R
Sbjct: 41  SKPGGKTAPQPVAVARRNAR 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,646
Number of Sequences: 336
Number of extensions: 1256
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)