Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M13
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    30   0.26 
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   5.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   5.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.8  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.8  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = -3

Query: 250 SQDHASAAVMNSVCTAASCCRNGNRSRSPASSRSGQRCSAXXXXXXXXXXXVARYSRYCS 71
           S  H S+A  +S  +++S  R+G  S S +SSRSG   S+               S   +
Sbjct: 520 SSVHTSSATSSSKSSSSSSSRSG--SSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSST 577

Query: 70  ATVPMYTPPESLRRSSTGSS 11
           +T  +     +   SS+ SS
Sbjct: 578 STSSVAVTSTAYSSSSSSSS 597


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  LDPVEERRSDSGGVYIGTVAEQYLEYRATRT 104
           ++P+EE  +D+    +  VA Q+L+ R   T
Sbjct: 430 INPIEENSADTNDDIVNQVAAQFLDEREFET 460


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 366 PERKRTPRPVSLRTRSKRPLPP--TPGQRR 283
           PE K+   PV LRT+  RP  P  TP +RR
Sbjct: 137 PEAKK---PVDLRTQHNRPQRPVVTPAKRR 163


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
 Frame = -3

Query: 253 SSQDHAS----AAVMNSVCTAASCCRNGNRSRSPASSRSGQRCSAXXXXXXXXXXXVARY 86
           S +DH +    A+V+ S  TAAS   NG    + AS++S                  A  
Sbjct: 230 SMKDHTTSNEQASVLTSANTAASTNTNGTAGGTSASAKSTSAADQAVASSKPIKKAWASV 289

Query: 85  SRYCSATVPMYTP-PES 38
           ++      P   P PES
Sbjct: 290 AKSKKKVTPAPAPAPES 306


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 167 PGVFEIGTTLLCGQVEAAVVDRPSRAILEILLGDGPDVHAPRVAA 33
           P +  IG T L  ++ A V D      L+ LLGD    +AP + A
Sbjct: 263 PSMLPIGGTSLDDELLAPVDDLNLDLGLDDLLGDEQGANAPAIEA 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,787
Number of Sequences: 5004
Number of extensions: 21877
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)